Please cite as : Wu R., A.E. Zimmerman, and K.S. Hofmockel. 2023. RNA viruses in grassland soils (Prosser, WA). [Data Set] PNNL DataHub. https://data.pnnl.gov/group/nodes/dataset/33706 The data is comprised of RNA viral sequences that were bioinformatically screened from the de novo assemblies of...
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Extreme weather events, including fires, heatwaves(HWs), and droughts, have significant impacts on earth, environmental, and power energy systems. Mechanistic and predictive understanding, as well as probabilistic risk assessment of these extreme weather events, are crucial for detecting, planning...
A major challenge in biotechnology and biomanufacturing is the identification of a set of biomarkers for perturbations and metabolites of interest. Here, we develop a data-driven, transcriptome-wide approach to rank perturbation-inducible genes from time-series RNA sequencing data for the discovery...
This dataset presents land surface parameters designed explicitly for global kilometer-scale Earth system modeling and has significant implications for enhancing our understanding of water, carbon, and energy cycles in the context of global change. Specifically, it includes four categories of...
The rhizosphere represents a dynamic and complex interface between plant hosts and the microbial community found in the surrounding soil. While it is recognized that manipulating the rhizosphere has the potential to improve plant fitness and health, engineering the rhizosphere microbiome through...
Agriculture is the largest source of greenhouse gases (GHG) production. Conversion of nitrogen fertilizers into more reduced forms by microbes through a process known as biological nitrification drives GHG production, enhances proliferation of toxic algal blooms, and increases cost of crop...
Metabolite exchange between plant roots and their associated rhizosphere microbiomes underpins plant growth promotion by microbes. Sorghum bicolor is a cereal crop that feeds animals and humans and is used for bioethanol production. Its root tips exude large amounts of a lipophilic benzoquinone...
Last updated on 2023-05-31T16:35:53+00:00 by LN Anderson PerCon SFA: Profiling sorghum-microbe interactions with a specialized photoaffinity probe identifies key sorgoleone binders in Acinetobacter pitti Mass spectrometry data analysis of SoDA-PAL photoaffinity probe labeled proteins and global...
Last updated on 2023-05-31T16:35:53+00:00 by LN Anderson PerCon SFA: Sequencing of Sorgoleone Promoting Rhizobacteria Isolates Whole genome sequencing (WGS) of sorgoleone utilizing rhizobacteria strains Pseudomonas sorgoleonovorans SO81 , Burkholderia anthina SO82 , and Acinetobacter pittii SO1 , as...
Last updated on 2023-03-21T18:35:22+00:00 by LN Anderson SAGE-RTP RT-PCR Amplicon Sequencing Barcode Count Analysis Promoter expression data for five bacterial species associated with the Serine recombinase Assisted Genome Engineering (SAGE) research project. Raw Measurement Data BioProject...
Elmore JR, Dexter GN, Baldino H, Huenemann JD, Francis R, Peabody GL 5th, Martinez-Baird J, Riley LA, Simmons T, Coleman-Derr D, Guss AM, Egbert RG. High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration. Sci Adv. 2023 Mar 10;9(10)...
Please cite as : McClure R.S., Y. Farris, R.E. Danczak, W.C. Nelson, H. Song, A. Kessler, and J. Lee, et al. 2022. Model Soil Consortium 2 (MSC-2) Bacterial Isolate Genomes. [Data Set] PNNL DataHub. https://doi.org/10.25584/PNNLDH/1986536 Model Soil Consortium 2 (MSC-2) Bacterial Isolate Genomes...
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Please cite as : McClure R.S., Y. Farris, R.E. Danczak, W.C. Nelson, H. Song, A. Kessler, and J. Lee, et al. 2022. 16s data from MSC-2 growth. [Data Set] PNNL DataHub. https://data.pnnl.gov/group/nodes/dataset/33231 16s data from MSC-2 growth 3 fastq of 16s amplicon data of MSC2 1 csv file of raw...
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Please cite as : McClure R.S., Y. Farris, R.E. Danczak, W.C. Nelson, H. Song, A. Kessler, and J. Lee, et al. 2022. Metatranscriptomic data from MSC-2. [Data Set] PNNL DataHub. https://data.pnnl.gov/group/nodes/dataset/33232 Metatranscriptomic data from MSC-2 12 fastq files (6 forward read, 6 reverse...
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Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson PerCon SFA Project Publication Experimental Data Catalog The Persistence Control of Engineered Functions in Complex Soil Microbiomes Project (PerCon SFA) at Pacific Northwest National Laboratory ( PNNL ) is a Genomic Sciences Program...
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