Please cite as : McClure R.S., Y. Farris, R.E. Danczak, W.C. Nelson, H. Song, A. Kessler, and J. Lee, et al. 2022. Model Soil Consortium 2 (MSC-2) Bacterial Isolate Genomes. [Data Set] PNNL DataHub. https://doi.org/10.25584/PNNLDH/1986536 Model Soil Consortium 2 (MSC-2) Bacterial Isolate Genomes...
Please cite as : McClure R.S., Y. Farris, R.E. Danczak, W.C. Nelson, H. Song, A. Kessler, and J. Lee, et al. 2022. 16s data from MSC-2 growth. [Data Set] PNNL DataHub. https://data.pnnl.gov/group/nodes/dataset/33231 16s data from MSC-2 growth 3 fastq of 16s amplicon data of MSC2 1 csv file of raw...
Please cite as : McClure R.S., Y. Farris, R.E. Danczak, W.C. Nelson, H. Song, A. Kessler, and J. Lee, et al. 2022. Metatranscriptomic data from MSC-2. [Data Set] PNNL DataHub. https://data.pnnl.gov/group/nodes/dataset/33232 Metatranscriptomic data from MSC-2 12 fastq files (6 forward read, 6 reverse...
A pre-trained convolutional neural network was fine-tuned for three separate classification tasks, distinguishing 2D images of: 1) single amino acids, 2) protein structural ball and stick images of metalloproteins, and 3) protein structural ball and stick images of metalloenzymes with the metal...
We present a dataset of structural relaxations of bulk ternary transition metal dichalcogenides (TMDs) computed via plane-wave density functional theory (DFT). We examined combinations of up to two chalcogenides with seven transition metals from groups 4-6 in octahedral (1T) or trigonal prismatic...
Ice nucleating particles (INPs) are a rare subset of atmospheric aerosol that can initiate primary ice formation and thus trigger cloud glaciation. There is a significant gap between our ability to measure INPs and to predict their concentrations and variability in large-scale weather and climate...
The demonstrated success of transfer learning has popularized approaches that involve pretraining models from massive data sources and subsequent finetuning towards a specific task. While such approaches have become the norm in fields such as natural language processing, implementation and...
Please cite as : McClure R.S., M.R. Garcia, S.P. Couvillion, and K.S. Hofmockel. 2022. 16s MSC-2 Leaveout Data. [Data Set] PNNL DataHub. https://doi.org/10.25584/PNNLDH/1986543 Understanding how microorganisms within a soil community interact to support collective respiration and growth remains...
Data comprised of 204, 103, 89, 66, 30, and 16 gas chromatography mass spectrometry (GC-MS) runs from human cerebrospinal fluid (CSF), standards, human blood plasma, human urine, fungi species (A. niger, A. nidulans, T. reesei), and soil crust, respectively Across 4,523,251 candidate matches, 13,487...
Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson Influenza A Virus Experiment ICL106 Metadata The purpose of this experiment was to evaluate the human host epigenetic response to Influenza A virus (subtype H5N1) infection. Samples were obtained from human lung adenocarcinoma cell line (Calu...
Please cite as : Wu R., M.R. Davison, W.C. Nelson, M.L. Smith, M.S. Lipton, J.K. Jansson, and R.S. McClure, et al. 2023. HiC manuscript: bulk metagenomic data_MG_raw Upload. [Data Set] PNNL DataHub. https://doi.org/10.25584/1922087 The raw bulk metagenomic data were trimmed and de-novo assembled...
Assembly product (viral contigs and MAGs) includes the dereplicated viral contigs and the finalized MAGs Note: ADDENDUM LINK REQUIRED for full download https://g-83fdd0.1beed.03c0.data.globus.org/MG_assembly_coassemblies.tar
Hi-C Viral Host Links: virus-host associations indicated by Hi-C sequencing were processed by Phase Genomics by folowing the protocal, https://www.biorxiv.org/content/10.1101/2021.06.14.448389v1.full
The raw metatranscriptome data collected along the course of metaphenome incubation were trimmed and quality controlled.
The Commission collects data from electric utility balancing authority and planning areas in the United States. The Form 714 is authorized by the Federal Power Act and is a regulatory support requirement as provided by 18 CFR ยง 141.51 External Link . The data will be used to obtain a broad picture...
