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Biography Ernesto Nakayasu is a senior research scientist focused on understanding molecular mechanisms of diseases. Nakayasu has been applying systems biology and mass spectrometry-based omics measurements to study how pathogens and metabolic alterations cause human diseases; the goal is to...

The Thermo Scientific LTQ Orbitrap Velos combines the proven mass accuracy and ultra-high resolution of the Orbitrap mass analyzer, with the increased sensitivity and improved cycle time of the LTQ Velos. The high mass accuracy of the LTQ Orbitrap Velos increases the speed and condense of indication...

The IONTOF TOF.SIMS 5 data source is a time-of-flight secondary ion mass spectrometer and powerful surface analysis tool used to investigate scientific questions in biological, environmental, and energy research. Among the most sensitive of surface analysis tools, it uses a high-vacuum technique...

LIQUID Software Overview LIQUID provides users with the capability to process high throughput data and contains a customizable target library and scoring model per project needs. The graphical user interface provides visualization of multiple lines of spectral evidence for each lipid identification...

PerCon SFA Project Publication Linked Data Catalog (uploads pending) The Persistence Control of Engineered Functions in Complex Soil Microbiomes Project (PerCon SFA), at Pacific Northwest National Laboratory (PNNL) is a Genomic Sciences Program, Biosystems Design, Research Science Focus Area project...

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"Visualizing the Hidden Half: Plant-Microbe Interactions in the Rhizosphere" Plant roots and the associated rhizosphere constitute a dynamic environment that fosters numerous intra- and interkingdom interactions, including metabolite exchange between plants and soil mediated by root exudates and the...

Multi-Omics Extended Data Package DOI Rapid Remodeling of the Soil Lipidome in Response to a Drying-Rewetting Event This study reveals specific changes in lipids and metabolites that are indicative of stress adaptation, substrate use, and cellular recovery during soil drying and subsequent rewetting...

MPLEx Method Protocol for Integrative Single-Sample Processing for Subsequent Proteomic, Metabolomic, and Lipidomic Analyses The Metabolite, Protein and Lipid Extraction (MPLEx) method protocol is a robust sample processing technique applicable to a breadth of diverse sample types, including various...

KS4A-Omics1.0_FspDS68 Fungal Monoisolate Multi-Omics Data Package DOI "A mineral doped micromodel platform demonstrates fungal bridging of carbon hotspots and hyphal transport of mineral derived nutrients" Molecular mechanisms underlying fungal mineral weathering and nutrient translocation in low...

Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V7.0 (May 2019)
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V6.0 (December 2018)
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V5.0 (September 2018)
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V4.0 (June 2018)
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V3.0 (March 2018) - Twelve examples of five-channel background graphs with embedded signal patterns at around ~1M nodes each. Multiple signal patterns have been embedded into each...
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V2.0 (October 2017) – Preliminary channel background graph with embedded signal patterns at various sizes (~7K, ~50K, and ~100K nodes). Signal patterns have also been extracted...