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Dr. Joshua Elmore is a Chemical Engineer at Pacific Northwest National Laboratory. He received his Ph. D. from the University of Georgia in the Department of Molecular Biology and Biochemistry studying the mechanisms of CRISPR/Cas microbial immune systems in hyperthermophilic Archaea. He was a...

Elise Van Fossen is a Post-Doctorate Research Associate in the Biological Sciences Division. Her research focuses on developing synthetic and chemical biology techniques for microorganism engineering.

A major challenge in biotechnology and biomanufacturing is the identification of a set of biomarkers for perturbations and metabolites of interest. Here, we develop a data-driven, transcriptome-wide approach to rank perturbation-inducible genes from time-series RNA sequencing data for the discovery...

The rhizosphere represents a dynamic and complex interface between plant hosts and the microbial community found in the surrounding soil. While it is recognized that manipulating the rhizosphere has the potential to improve plant fitness and health, engineering the rhizosphere microbiome through...

Agriculture is the largest source of greenhouse gases (GHG) production. Conversion of nitrogen fertilizers into more reduced forms by microbes through a process known as biological nitrification drives GHG production, enhances proliferation of toxic algal blooms, and increases cost of crop...

Last updated on 2023-03-21T18:35:22+00:00 by LN Anderson SAGE-RTP RT-PCR Amplicon Sequencing Barcode Count Analysis Promoter expression data for five bacterial species associated with the Serine recombinase Assisted Genome Engineering (SAGE) research project. Raw Measurement Data NCBI BioProject...

Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson PerCon SFA Project Publication Experimental Data Catalog The Persistence Control of Engineered Functions in Complex Soil Microbiomes Project (PerCon SFA) at Pacific Northwest National Laboratory ( PNNL ) is a Genomic Sciences Program...

  1. Datasets

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Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V7.0 (May 2019)
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V6.0 (December 2018)
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V5.0 (September 2018)
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V4.0 (June 2018)
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V3.0 (March 2018) - Twelve examples of five-channel background graphs with embedded signal patterns at around ~1M nodes each. Multiple signal patterns have been embedded into each...
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V2.0 (October 2017) – Preliminary channel background graph with embedded signal patterns at various sizes (~7K, ~50K, and ~100K nodes). Signal patterns have also been extracted...
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V1.0 (September 2017) – Three preliminary channel background graphs with and without embedded signal patterns.
St. Himark is a vibrant community located in the Oceanus Sea. Home to the world-renowned St. Himark Museum, beautiful beaches, and the Wilson Forest Nature Preserve, St. Himark is one of the region’s best cities for raising a family and provides employment across a number of industries including the...