Dataset - Omics, Transcriptomics, Microarray Systems Virology Lethal Human Virus, SARS-CoV Experiment SHAE003

https://doi.org/10.25584/LHVSHAE003/1661972
Biology
Human Health
Virus
Viruses
Health
Virology

 

Systems Virology Lethal Human Virus, SARS-CoV Experiment SHAE003

New uploads pending

 

The purpose of this SARS experiment was to obtain samples for transcriptome analysis in Human Airway Epithelial (HAE) cells infected with SARS-CoV, SARS deltaORF6, SARS BatSRBD mutants in a longitudinal study. 

Overall Design: Primary Human airway epithelium (HAE) cells (resembling in vivo pseudo- stratified mucociliary epithelium) were infected with SARS-CoV, SARS deltaORF6, SARS BatSRBD mutant at an MOI of 2. RNA triplicates/quadruplicates are defined as 3/4 different wells, plated at the same time and using the same cell stock for all replicates. Time matched mocks done in triplicate from same cell stock as rest of samples. Culture medium (the same as what the virus stock is in) will be used for the mock infections. Time points used were: 0, 24, 48, 60, 72, 84, and 96 hrs post-infection.

SHAE003 did not include the 12 and 36 hr. time points.

Processed Omics Data (available at download button):

Dataset downloads contain one or more statistically processed data file related to a lipidomic, transcriptomic, metabolomic, and/or proteomic dataset collection associated with the SARS experimental study.

 

Transcriptomics

mRNA

Related Experimental Data

 

BioProject:  PRJNA208497

GEO Dataset:  GSE47961 

GEO SuperSeries: GSE47963 SARS-CoV, SARS-dORF6, and SARS-BatSRBD infection of HAE cultures.

Host Factor Experiment(s): SHAE003-R (ViPR, NIAID Systems Biology)

DOI:  10.1371/journal.pone.0069374

English
Publications (1)
A Network Integration Approach to Predict Conserved Regulators Related to Pathogenicity of Influenza and SARS-CoV Respiratory Viruses
People (3)
Lindsey N. Anderson

Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

Jason McDermott

Dr. Jason McDermott, senior research scientist, has extensive research experience in molecular and structural virology and data resource design, data integration and prediction of biological networks, bridging experimental and computational biology. Currently, his research interests include data...

Katrina Waters

Dr. Katrina Waters is the division director for Biological Sciences at the Pacific Northwest National Laboratory. Waters has a Ph.D. in biochemistry and more than 15 years of experience in microarray and proteomics data analysis. Her research interests are focused on the integration of genomics...