Omics-Lethal Human Viruses, Influenza A Experiment ICL105

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Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson

Influenza A Virus Experiment ICL105 Metadata

The purpose of this experiment was to evaluate the host epigenetic response to Influenza A (H5N1) virus infection. Sample data was obtained from human lung adenocarcinoma cells (Calu-3) and processed for genome binding/occupancy profiling by high throughput sequencing.

Processed ChIP-Seq Data Unavailable.

Linked Primary Data Accessions

    NCBI BioProject: PRJNA428999

    GEO Series: GSE108881*

    SRA Accession: SRP128562 

    *Raw measurement data has primary data publication PMID: 29339515


    Acknowledgment of Federal Funding

    The data described here was funded in whole or in part by the National Institute of Allergy and Infectious Diseases, of the National Institutes of Health under award number U19AI106772 and is a contribution of the "Modeling Host Responses to Understand Severe Human Virus Infections" Project at Pacific Northwest National Laboratory. Data generated by the Omics-LHV Core for proteomics, metabolomics, and lipidomics analyses for were performed at Pacific Northwest National Laboratory in the Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by the Department of Energy’s (DOE) Office, operating under the Battelle Memorial Institute for the DOE under contract number DE-AC05-76RLO1830. 

    Data Licensing

    CC0 1.0 (project metadata and PNNL DataHub policy default)

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    Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

    Dr. Katrina Waters is the division director for Biological Sciences at the Pacific Northwest National Laboratory. Waters has a Ph.D. in biochemistry and more than 15 years of experience in microarray and proteomics data analysis. Her research interests are focused on the integration of genomics...

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