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Omics-LHV, West Nile

Experiment WCD003


The purpose of this West Nile experiment was to obtain samples for omics analysis in mouse dendritic cell response to wild-type West Nile virus (WNV).

Overall Design: Mouse dendritic cells (2 x 10^5) were treated with wild-type WNV and collected in parallel with time-matched mock samples. Time point collections used were: 0 (untreated control), 4, 8, 12,  and 24 hrs post-infection (2 biological replicates per omics data collection).


Processed Omics Data (available at download button):

Dataset downloads contain one or more statistically processed data file related to a lipidomic, transcriptomic, metabolomic, and/or proteomic dataset collection associated with a West Nile experimental study. 





Related Experimental Data

PRIDE:  PXD002357 (lipidome), PXD002356 (metabolome), PXD002355 (proteome)

MassIVE:  MSV000079150 (lipidome response), MSV000079149 (metabolome response), MSV000079148 (proteome response)

People (3)

Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

Dr. Jason McDermott, senior research scientist, has extensive research experience in molecular and structural virology and data resource design, data integration and prediction of biological networks, bridging experimental and computational biology. Currently, his research interests include data...

Dr. Katrina Waters is the division director for Biological Sciences at the Pacific Northwest National Laboratory. Waters has a Ph.D. in biochemistry and more than 15 years of experience in microarray and proteomics data analysis. Her research interests are focused on the integration of genomics...