Journal Article
Applied and Environmental Microbiology, vol. 81, iss. 17, pp. 5907-5916, 2015
Authors
Z. J. Jay, J. P. Beam, A. Dohnalkova, R. Lohmayer, B. Bodle, B. Planer-Friedrich, M. Romine, W. P. Inskeep, G. Voordouw
Abstract
ABSTRACT
Thermoproteales
(phylum
Crenarchaeota
) populations are abundant in high-temperature (>70°C) environments of Yellowstone National Park (YNP) and are important in mediating the biogeochemical cycles of sulfur, arsenic, and carbon. The objectives of this study were to determine the specific physiological attributes of the isolate
Pyrobaculum yellowstonensis
strain WP30, which was obtained from an elemental sulfur sediment (Joseph's Coat Hot Spring [JCHS], 80°C, pH 6.1, 135 μM As) and relate this organism to geochemical processes occurring
in situ
. Strain WP30 is a chemoorganoheterotroph and requires elemental sulfur and/or arsenate as an electron acceptor. Growth in the presence of elemental sulfur and arsenate resulted in the formation of thioarsenates and polysulfides. The complete genome of this organism was sequenced (1.99 Mb, 58% G+C content), revealing numerous metabolic pathways for the degradation of carbohydrates, amino acids, and lipids. Multiple dimethyl sulfoxide-molybdopterin (DMSO-MPT) oxidoreductase genes, which are implicated in the reduction of sulfur and arsenic, were identified. Pathways for the
de novo
synthesis of nearly all required cofactors and metabolites were identified. The comparative genomics of
P. yellowstonensis
and the assembled metagenome sequence from JCHS showed that this organism is highly related (∼95% average nucleotide sequence identity) to
in situ
populations. The physiological attributes and metabolic capabilities of
P. yellowstonensis
provide an important foundation for developing an understanding of the distribution and function of these populations in YNP.
