Dataset - Omics, Transcriptomics, Microarray Omics-Lethal Human Viruses, West Nile Experiment WLN002

https://doi.org/10.25584/LHVWLN002/1661960
Biology
Human Health
Integrative Omics
Virus
Viruses
Virology
Health

Omics-LHV, West Nile

Experiment WLN002

 

The purpose of this West Nile experiment was to obtain serum samples for transcriptome analysis in mouse popliteal draining lymph nodes (DLN) infected with wild-type West Nile virus (WNV; WNV-NY99 382), and mutant WNV-E218A (WNV-NY99 382 E218A 2 nt).

Overall Design: Mice were inoculated with West Nile Virus (WNV) in both hind footpads using a dose of 100 FFU. Draining lymph nodes (DLN) are collected from both hind legs for a total of 2 samples. For mock inoculated mice, DLN from two mice were pooled for a total of 4 samples.Infected samples were then collected in quintuplet in addition to time-matched mocks in parallel (in triplicate) with infected samples. Time points used were: 1, 2, 4, and 6 days post-infection.

See Experiment WLN003 for corresponding omics analysis.

Processed Omics Data (available at download button):

Dataset downloads contain one or more statistically processed data file related to a lipidomic, transcriptomic, metabolomic, and/or proteomic dataset collection associated with a West Nile experimental study. 

 

Transcriptomics

mRNA

miRNA

Related Experimental Data

BioProject:  PRJNA314302, PRJNA314303

GEO:  GSE78888 (mRNA transcriptome response), GSE78887 (miRNA transcriptome response)

English
Projects (2)
Omics Lethal Human Viruses Project Profiling of the Host Response to West Nile Virus Infection, Processed Experimental Dataset Catalog
NIAID Modeling Host Responses to Understand Severe Human Virus Infections, Multi-Omic Viral Dataset Catalog Collections
Publications (1)
Hypergraph models of biological networks to identify genes critical to pathogenic viral response
People (3)
Lindsey N. Anderson

Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

Jason McDermott

Dr. Jason McDermott, senior research scientist, has extensive research experience in molecular and structural virology and data resource design, data integration and prediction of biological networks, bridging experimental and computational biology. Currently, his research interests include data...

Katrina Waters

Dr. Katrina Waters is the division director for Biological Sciences at the Pacific Northwest National Laboratory. Waters has a Ph.D. in biochemistry and more than 15 years of experience in microarray and proteomics data analysis. Her research interests are focused on the integration of genomics...

Software (1)
pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data