Category
Description
Omics-LHV, West Nile
Experiment WLN002
The purpose of this West Nile experiment was to obtain serum samples for transcriptome analysis in mouse popliteal draining lymph nodes (DLN) infected with wild-type West Nile virus (WNV; WNV-NY99 382), and mutant WNV-E218A (WNV-NY99 382 E218A 2 nt).
Overall Design: Mice were inoculated with West Nile Virus (WNV) in both hind footpads using a dose of 100 FFU. Draining lymph nodes (DLN) are collected from both hind legs for a total of 2 samples. For mock inoculated mice, DLN from two mice were pooled for a total of 4 samples.Infected samples were then collected in quintuplet in addition to time-matched mocks in parallel (in triplicate) with infected samples. Time points used were: 1, 2, 4, and 6 days post-infection.
See Experiment WLN003 for corresponding omics analysis.
Processed Omics Data (available at download button):
Dataset downloads contain one or more statistically processed data file related to a lipidomic, transcriptomic, metabolomic, and/or proteomic dataset collection associated with a West Nile experimental study.
Transcriptomics
mRNA
miRNA
Related Experimental Data
BioProject: PRJNA314302, PRJNA314303
GEO: GSE78888 (mRNA transcriptome response), GSE78887 (miRNA transcriptome response)