srpAnalytics.1.0

Dataset Image

download Download

Description

The OSU/PNNL Superfund Research Program (SRP) represents a longstanding collaboration to quantify Polycyclic Aromatic Hydrocarbons (PAHs) at various superfund sites in the Pacific Northwest and assess their potential impact on human health. To link the chemical measurements to biological activity, we use zebrafish (Danio rerio) as a high-throughput developmental toxicity model that provides quantitative measurements of the exposure to chemicals. Herein, we provide a first release dataset, linking environmental exposure to biological response, for download and reanalysis. For navigation of public access datasets for interactive exploration and re-use, visit the SRP web portal at http://srp.pnnl.gov.

Related Content

For more information about the OSU/PNNL Superfund Program project, visit https://superfund.oregonstate.edu/

 

Funding Acknowledgments

The research reported herein was supported by the National Institute of Environmental Health Sciences (NIEHS), of the National Institutes of Health, as part of the Superfund Hazardous Substance Research and Training Program (SRP) under the award numbers P42 ES016465 and P30 ES030287. This work was funded in part by the Pacific Northwest National Laboratory, operated by Battelle Memorial Institute for the U.S. Department of Energy under the Contract No. DE-AC05-76RL01830.

Cite as

  1. Gosline, Sara, Anderson, Lindsey, & Waters, Katrina. PNNL Superfund Research Program Analytics (srpAnalytics Data Release v.1.0). United States. 2023. PNNL DataHub (Web). DOI: https://doi.org/10.25584/1923005
  2. Gosline, S.J.C., Kim, D.N., Pande, P. et al. The Superfund Research Program Analytics Portal: linking environmental chemical exposure to biological phenotypes. Sci Data 10, 151 (2023). https://doi.org/10.1038/s41597-023-02021-5

 

Last updated on 2023-03-28T14:48:08+00:00 by LN Anderson

English
Projects (1)
Publications (1)
People (3)

Sara Gosline received BA in Computer Science from Columbia University and spent two years working in software before returning to graduate school full time. She received her Masters and PhD in Computer Science from McGill University with a specialty in Bioinformatics and then moved to the...

Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

Dr. Katrina Waters is the division director for Biological Sciences at the Pacific Northwest National Laboratory. Waters has a Ph.D. in biochemistry and more than 15 years of experience in microarray and proteomics data analysis. Her research interests are focused on the integration of genomics...

Data Sources (1)
Institutions (1)
Resources (1)