Omics-Lethal Human Viruses, Influenza A Experiment ICL106

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Influenza A Experiment ICL106

Processed Omics Data Unavailable

The purpose of this experiment was to evaluate the human host epigenetic response to Influenza A H5N1 virus and MERS-CoV viral infection from human lung adenocarcinoma cell (Calu-3) high throughput sequencing (MeDIP-Seq) sample data.

Related Experimental Data

    BioProject: PRJNA428998

    GEO Accession: GSE108882 (Genome binding/occupancy profiling by high throughput sequencing)*

    SRA Accession: SRP128563 (MeDIP-Seq)

    *Raw measurement data has primary data publication PMID: 29339515


    Acknowledgment of Federal Funding

    The data described here was funded in whole or in part by the National Institute of Allergy and Infectious Diseases, of the National Institutes of Health under award number U19AI106772 and is a contribution of the "Modeling Host Responses to Understand Severe Human Virus Infections" Project at Pacific Northwest National Laboratory. Data generated by the Omics-LHV Core for proteomics, metabolomics, and lipidomics analyses for were performed at Pacific Northwest National Laboratory in the Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by the Department of Energy’s (DOE) Office, operating under the Battelle Memorial Institute for the DOE under contract number DE-AC05-76RLO1830. 

    Data Licensing

    CC0 1.0 (project metadata and PNNL DataHub policy default)

    Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson

    Projects (2)
    Omics Lethal Human Viruses Project Profiling of the Host Response to Influenza A Virus Infection, Processed Experimental Dataset Catalog
    NIAID Modeling Host Responses to Understand Severe Human Virus Infections, Multi-Omic Viral Dataset Catalog Collections
    Publications (1)
    MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape
    People (2)

    Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

    Dr. Katrina Waters is the division director for Biological Sciences at the Pacific Northwest National Laboratory. Waters has a Ph.D. in biochemistry and more than 15 years of experience in microarray and proteomics data analysis. Her research interests are focused on the integration of genomics...

    Data Sources (1)
    Institutions (2)