Software R. toruloides Nitrogen Limitation Multi-PTM Profiling R Package

Custom pipeline for relative quantification analysis of protein abundance, cysteine thiol oxidation (“Redox”), and phosphorylation (“Phospho”) experimental sample data using a semi-automated multi-PTM proteomic approach.

Cite as

1. Gluth, A., Sagendorf, T., Day, N., & Zhang, T. (2025). R. toruloides Nitrogen Limitation Multi-PTM Profiling R Package. Zenodo. https://doi.org/10.5281/zenodo.14714224

Funding Acknowledgments

The research data described here was funded in whole or in part by the Predictive Phenomics Initiative (PPI) at Pacific Northwest National Laboratory (PNNL). This work was conducted under the Laboratory Directed Research and Development Program at PNNL. A portion of this research was performed in the Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by the U.S. Department of Energy (DOE) Office of Science located at PNNL. PNNL is a multiprogram national laboratory operated by Battelle for the DOE under Contract No. DE-AC05-76RL01830.

Citation Policy

In efforts to enable discovery, reproducibility, and reuse of PPI-funded project source code in accordance with best practices (as outlined by the FAIR4RS Principles), we ask that all reuse of all project source code materials acknowledge all primary and secondary software citations and corresponding journal articles where applicable.