Christine H Chang, William C Nelson, Abby Jerger, Aaron T Wright, Robert G Egbert, Jason E McDermott, Snekmer: a scalable pipeline for protein sequence fingerprinting based on amino acid recoding, Bioinformatics Advances , Volume 3, Issue 1, 2023, vbad005, https://doi.org/10.1093/bioadv/vbad005...
Filter results
Category
- (-) Computational Research (4)
- (-) National Security (2)
- Scientific Discovery (30)
- Biology (28)
- Earth System Science (21)
- Microbiome Science (11)
- Integrative Omics (9)
- Human Health (6)
- Chemical & Biological Signatures Science (1)
- Chemistry (1)
- Computing & Analytics (1)
- Data Analytics & Machine Learning (1)
- Ecosystem Science (1)
- High-Performance Computing (1)
- Materials Science (1)
- Plant Science (1)
- Weapons of Mass Effect (1)
Content type
Tags
- (-) Omics (2)
- (-) RNA Sequence Analysis (2)
- (-) High-Performance Computing (1)
- Machine Learning (6)
- Type 1 Diabetes (6)
- Autoimmunity (5)
- Synthetic (5)
- Biomarkers (4)
- Molecular Profiling (4)
- Predictive Modeling (4)
- Mass spectrometry-based Omics (3)
- Software Data Analysis (3)
- Alternative Splicing (2)
- Cybersecurity (2)
- DNA Sequence Analysis (2)
- Electrical energy (2)
- Functional Annotation Analysis (2)
- Kmers (2)
- Proteomics (2)
- Python (2)
- Snakemake (2)
- EBC (1)
- Exhaled Breath Condensate (1)
- Marine and Hydrokinetic (1)
- Mass Spectrometry (1)
- Output Databases (1)
- Quantification (1)
- Statistics (1)
- TMT (1)
- underwater video (1)
pmartR Software Overview The pmartR package provides a single software tool for QC (filtering and normalization), exploratory data analysis (EDA), and statistical analysis (robust to missing data) and includes numerous visualization capabilities of mass spectrometry (MS) omics data (proteomic...
Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson Snekmer: A scalable pipeline for protein sequence fingerprinting using amino acid recoding (AAR) Snekmer is a software package designed to reduce the representation of protein sequences by combining amino acid reduction (AAR) with the kmer...
Datasets
1
ProxyTSPRD profiles are collected using NVIDIA Nsight Systems version 2020.3.2.6-87e152c and capture computational patterns from training deep learning-based time-series proxy-applications on four different levels: models (Long short-term Memory and Convolutional Neural Network), DL frameworks...