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Project
PREMIS-TAI: Beaver Creek Soil Incubation
Coastal landscapes are increasingly exposed to seawater due to sea level rise and extreme weather events. The biogeochemical responses of these vulnerable ecosystems are poorly understood, limiting our ability to predict how their role in global biogeochemical cycles will shift under future...
Coastal Science

  1. Datasets

    1
Person
Dan Naylor
Education: University of California-Berkeley, PhD Plant Biology University of California-Davis, BS Plant Biology Publications: 2020 Naylor D.T., S.J. Fansler, C.J. Brislawn, W.C. Nelson, K.S. Hofmockel, J.K. Jansson, and R.S. McClure. 2020. "Deconstructing the Soil Microbiome into Reduced-Complexity...
Microbiome Science
Publication
Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome
The soil microbiome is central to the cycling of carbon and other nutrients and to the promotion of plant growth. Despite its importance, analysis of the soil microbiome is difficult due to its sheer complexity, with thousands of interacting species. Here, we reduced this complexity by developing...
Biology
Earth System Science
Person
Michelle R Davison
Michelle Davison is a microbiologist with a love of challenging, creative, and multidisciplinary projects. She is interested in the role phage play in environmental systems, as well as the myriad ways they can be harnessed as tools. She has experience isolating, developing and working with non-model...
Microbiome Science
Person
Ryan McClure
Publications: 2018 Khan NE, Y Maezato, RS McClure, CJ Brislawn, JM Mobberley, NG Isern, WB Chrisler, LM Markillie, BM Barney, HS Song, WC Nelson, and HC Bernstein. 2018. "Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture." Scientific...
Microbiome Science
Person
Yuliya Farris
PNNL Publications 2020 Ogden A.J., T.W. Wietsma, T.E. Winkler, Y. Farris, G.L. Myers, and A. Ahkami. 2020. "Dynamics of Global Gene Expression and Regulatory Elements in Growing Brachypodium Root System." Scientific Reports 10. PNNL-SA-145907. doi:10.1038/s41598-020-63224-z 2019 Boiteau R.M., S.J...
Microbiome Science
Person
Kimberly J. Tyrrell
PNNL Publications 2020 Smith J.N., K.J. Tyrrell, J.P. Smith, J.P. Smith, K.K. Weitz, and W.D. Faber. 2020. "Linking Internal Dosimetries of the Propyl Metabolic Series in Rats and Humans Using Physiologically Based Pharmacokinetic (PBPK) Modeling." Regulatory Toxicology and Pharmacology 110. PNNL...
Microbiome Science
Publication
Terabase Metagenome Sequencing of Grassland Soil Microbiomes
As part of the Pacific Northwest National Laboratory’s (PNNL) Science Focus Area program, we are investigating the impact of environmental change on microbial community function in grassland soils. Three grassland soils, representing different moisture regimes, were selected for ultra-deep...
Earth System Science
Biology
Publication
Metabotyping as a stopover in Genome-to-phenome Mapping
Predicting phenotypic expression from genomic and environmental information is arguably the greatest challenge in today’s biology. Being able to survey genomic content, e.g., as single-nucleotide polymorphism data, within a diverse population and predict the phenotypes of external traits, represents...
Earth System Science
Publication
Selection, Succession, and Stabilization of Soil Microbial Consortia
Soil microorganisms play fundamental roles in cycling of soil carbon, nitrogen, and other nutrients, yet we have a poor understanding of how soil microbiomes are shaped by their nutritional and physical environment. In this study, we investigated the successional dynamics of a soil microbiome during...
Earth System Science
Biology
Publication
Estimating Hourly Land Surface Downward Shortwave and Photosynthetically Active Radiation from DSCOVR/EPIC Observations
The direct and diffused components of downward shortwave radiation (SW), and photosynthetically active radiation (PAR) at the Earth surface play an essential role in biochemical (e.g. photosynthesis) and physical (e.g. energy balance) processes that control weather and climate conditions, and...
Earth System Science
Publication
Localized basal area affects soil respiration temperature sensitivity in a coastal deciduous forest
Soil respiration (Rs), the flow of CO2 from the soil surface to the atmosphere, is one of the largest carbon fluxes in the terrestrial biosphere. The spatial variability of Rs is both large and poorly understood, limiting our ability to robustly scale it in space. One factor in Rs spatial...
Earth System Science
Publication
Soil respiration variability and correlation across a wide range of temporal scales
The high temporal variability of the soil-to-atmosphere CO2 flux (soil respiration, RS) has been studied at hourly to multiannual timescales, but remains less well understood than RS spatial variability. How RS fluxes vary and are auto-correlated at various time lags has practical implications for...
Earth System Science
Project
Clinical Proteomic Tumor Analysis Consortium (CPTAC)
Clinical Proteomic Tumor Analysis Consortium (CPTAC) ovarian cancer proteogenomics project. Characterization of tumors using proteomics and phosphoproteomics to identify signatures of drug resistance and characterize pathways associated with tumor versus normal tissue.
Biology

  1. Datasets

    1
Project
Omics Lethal Human Viruses Project Profiling of the Host Response to West Nile Virus Infection, Processed Experimental Dataset Catalog

Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson Omics-LHV Profiling of Host Response to West Nile Virus Infection Background West Nile virus ( WNV ) belongs to the mosquito-borne Flaviviridae family and is classified as a Category A priority pathogen by the National Institute of Allergy and...

Biology
Human Health
Integrative Omics

  1. Datasets

    11