Dataset - Proteomics SoDA-PAL Protein Profiling Proteomics of Sorgoleone Catabolizing Microbial Isolate Acinetobacter pittii SO1

https://doi.org/10.25584/PerConSFA/2338181
Scientific Discovery
Biology
Microbiome Science
PerCon SFA
Mass spectrometry data
Proteomics
Photoaffinity Probe Labeling
SoDA-PAL Profiling
Sorgoleone Catabolism
A. pittii SO1

Last updated on 2024-04-19T19:12:08+00:00 by LN Anderson

PerCon SFA: Profiling sorghum-microbe interactions with a specialized photoaffinity probe identifies key sorgoleone binders in Acinetobacter pitti

Mass spectrometry-based global proteome analysis and SoDA-PAL photoaffinity probe labeled protein analysis of microbial isolate Acinetobacter pittii SO1 sorgoleone interactome.

Raw Measurement Data Accessions

  • MassIVE: MSV000091986 (global and probe-labeled datasets)

 

Related Sequence Collections

 

Funding Acknowledgments

The provided material is based upon work supported by the  U.S. Department of Energy, Office of Biological and Environmental Research, Genomic Science Program and is a contribution of the Pacific Northwest National Laboratory Persistence Control of Engineered Functions in Complex Soil Microbiomes project. A portion of this research is supported under the EMSL user project award 10.46936/cpcy.proj.2022.60649/60008751, for leveraging instrument capabilities operating at the Environmental Molecular Sciences Laboratory, a DOE Office of Science User Facility, sponsored by the Biological and Environmental Research program under Contract No. DE-AC05-76RL01830. 

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Data Licensing

CC BY 4.0 (dataset DOI downloads), CC0 1.0 (PNNL DataHub policy default)

English
Projects (1)
Persistence Control of Engineered Functions in Complex Soil Microbiomes (PerCon SFA), Secure Biosystems Design Project
Datasets (1)
Whole Genome Sequencing of Sorgoleone Promoting Rhizobacteria Isolates
People (5)
Lindsey N. Anderson

Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

Elise Van Fossen

Elise Van Fossen is a Post-Doctorate Research Associate in the Biological Sciences Division. Her research focuses on developing synthetic and chemical biology techniques for microorganism engineering.

Vivian Lin

PerCon SFA, Co-Investigator Vivian Lin earned her PhD in organic chemistry from the University of California, Berkeley with Professor Chris Chang, developing fluorescent probes for imaging redox active small molecules. Afterward, she traveled to Switzerland for a postdoctoral fellowship in the...

Dr William C Nelson

Dr. Nelson’s background is in genomic analysis of microbial organisms. He spent 10 years at The Institute for Genomic Research (TIGR), first as a data analyst and then as the team lead for Microbial Annotation. He was involved in some of the earliest bacterial genome sequencing projects, including...

Robert Egbert

Biography I am a biological engineer working to advance high-throughput biological engineering for rapid optimization of complex gene clusters and dynamical systems in microbes through pooled genomic library assembly, high-throughput sequencing and variant scoring. I utilize machine learning...

Data Sources (1)
Q Exactive Plus Mass Spectrometer
Institutions (1)
Environmental Molecular Sciences Laboratory