Dataset - Genomics Whole Genome Sequencing of Sorgoleone Promoting Rhizobacteria Isolates (PRJNA878512)

Data Sample

PRJNA878512_AssemblyDetails.txt
Scientific Discovery
Biology
Microbiome Science
PerCon SFA
Genomics
Whole Genome Sequencing
Sorgoleone bicolor
Rhizosphere Soil
Microbial Isolates
A. pittii SO1
B. anthina SO82
P. sorgoleonovorans SO81

Last updated on 2023-05-31T16:35:53+00:00 by LN Anderson

PerCon SFA: Sequencing of Sorgoleone Promoting Rhizobacteria Isolates

Whole genome sequencing (WGS) of sorgoleone utilizing rhizobacteria strains Pseudomonas sorgoleonovorans SO81, Burkholderia anthina SO82, and Acinetobacter pittii SO1, as potential plant growth promoting microbes (PGPM), derived from Sorghum bicolor rhizosphere soil extracts.

Raw Measurement Data

BioProject Collection: PRJNA878512

1. BioSample: SAMN31055413

2. BioSample: SAMN31055412

3. BioSample: SAMN31055411

 

Reference Citation

  1. Genomic Science Program (GSP) Biosystems Design Project: Persistence Control of Engineered Functions in Complex Soil Microbiomes. PerCon SFA: Sorgoleone Microbial Specie Isolate Genome Sequencing Collection, Persistence Control SFA: Whole Genome Sequencing of Sorgoleone Promoting Rhizobacteria Isolates. 2022/09. In: BioProject [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; 2011-. Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA878512. NCBI:BioProject: PRJNA878512.

Funding Acknowledgments

The provided material is based upon work supported by the  U.S. Department of Energy, Office of Biological and Environmental Research, Genomic Science Program and is a contribution of the Pacific Northwest National Laboratory Persistence Control of Engineered Functions in Complex Soil Microbiomes project (https://doi.org/10.25584/1969551). Pacific Northwest National Laboratory is a multiprogram national laboratory managed by the Battelle Memorial Institute Battelle Memorial Institute, operating under the U.S. Department of Energy Contract DE-AC05-76RL01830. 

Data Reuse Citation Policy

When referencing and reusing linked PerCon SFA project digital data assets listed at the PNNL DataHub institutional repository, we ask that users please cite the dataset digital object identifier provided at the download page and any corresponding journal article publications. Reference citations, where applicable, should provide the necessary metadata information required to support, corroborate, verify, and otherwise determine the legitimacy of the research findings provided (data and code) from scholarly publications and corresponding project data releases.

Data Licensing

CC BY-SA 4.0 (processed datasets), CC0 1.0 PNNL DataHub policy default for metadata)

English
Projects (1)
Persistence Control of Engineered Functions in Complex Soil Microbiomes (PerCon SFA), Secure Biosystems Design Project
Publications (1)
Sorgoleone degradation by sorghum-associated bacteria; an opportunity for enforcing plant growth promotion (pre-print)
People (3)
Lindsey N. Anderson

Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

Ryan McClure

Publications: 2018 Khan NE, Y Maezato, RS McClure, CJ Brislawn, JM Mobberley, NG Isern, WB Chrisler, LM Markillie, BM Barney, HS Song, WC Nelson, and HC Bernstein. 2018. "Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture." Scientific...

Dr William C Nelson

Dr. Nelson’s background is in genomic analysis of microbial organisms. He spent 10 years at The Institute for Genomic Research (TIGR), first as a data analyst and then as the team lead for Microbial Annotation. He was involved in some of the earliest bacterial genome sequencing projects, including...

Data Sources (1)
PacBio Sequel II Sequencing System