Resource - Algorithm Output R Source Code for Soil Microbiome SFA Soil Viral Metagenome Community Detected Across Historical Moisture Regimes

The following R source code was used for plotting figures of the viral communities detected from three grasslands soil metagenomes with a historical precipitation gradient (WA-TmG.2.0, KS-TmG.2.0, IA-TmG.2.0) from project publication 'DNA viral diversity, abundance and functional potential vary across grassland soils with a range of historical moisture regimes' resulting project data packages.

Grassland Virome Data Analysis Repository

This GitHub Repository contains viral communities detected from three grasslands with a historical precipitation gradient (IA > KS > WA).

R codes used for plotting the figures of manuscript titled 'DNA viral diversity, abundance and functional potential vary across grassland soils with a range of historical moisture regimes' (currently submitted for review)
R code of structure equation modeling used in the manuscript
lysozyme hidden markov models
viral contigs screened from the de novo assemblies of the metagenomes

Related Resource Files

Projects (1)

The Phenotypic Response of the Soil Microbiome to Environmental Perturbations Project (Soil Microbiome SFA) at Pacific Northwest National Laboratory is a Genomic Sciences Program Science Focus Area (SFA) Project operating under the Environmental Microbiome Science Research Area. The Soil Microbiome...

Biology

Microbiome Science

Earth System Science