R Source Code for Soil Microbiome SFA Soil Viral Metagenome Community Detected Across Historical Moisture Regimes

Description

The following R source code was used for plotting figures of the viral communities detected from three grasslands soil metagenomes with a historical precipitation gradient (WA-TmG.2.0, KS-TmG.2.0, IA-TmG.2.0) from project publication 'DNA viral diversity, abundance and functional potential vary across grassland soils with a range of historical moisture regimes' resulting project data packages.

 

Grassland Virome Data Analysis Repository

This GitHub Repository contains viral communities detected from three grasslands with a historical precipitation gradient (IA > KS > WA).

  1. R codes used for plotting the figures of manuscript titled 'DNA viral diversity, abundance and functional potential vary across grassland soils with a range of historical moisture regimes' (currently submitted for review)
  2. R code of structure equation modeling used in the manuscript
  3. lysozyme hidden markov models
  4. viral contigs screened from the de novo assemblies of the metagenomes

Related Resource Files

  1. README.md
  2. WA_KS_IA_viralseq.fasta.zip
  3. P1_all_graph_03102021.R
Projects (1)

The Phenotypic Response of the Soil Microbiome to Environmental Perturbations Project (Soil Microbiome SFA) at Pacific Northwest National Laboratory is a Genomic Sciences Program Science Focus Area (SFA) Project operating under the Environmental Microbiome Science Research Area. The Soil Microbiome...

  1. Datasets

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Datasets (1)
Publications (1)
Ruonan Wu
Michelle R Davison
Dr William C Nelson
Emily Graham
Sarah J. Fansler
Yuliya Farris
Jason McDermott
Kirsten Hofmockel
Janet K. Jansson
Sheryl L. Bell
People (1)

Staff Scientist at Pacific Northwest National Laboratory