PNNL Soil Microbiome SFA

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Description

The Phenotypic Response of the Soil Microbiome to Environmental Perturbations Project (Soil Microbiome SFA) at Pacific Northwest National Laboratory is a Genomic Sciences Program Science Focus Area (SFA) Project operating under the Environmental Microbiome Science Research Area. The Soil Microbiome SFA aims to develop a systems-level understanding of soil microbial and phenotypic responses to changing moisture through a tractable, spatially explicit examination of the molecular and ecological interactions occurring within and between microbial consortia in soil. The Soil Microbiome SFA project repository at PNNL DataHub allows for exploring and downloading integrated experimental omics data, experimental metadata, pre- and post-processed data files, and other associated materials directly related to experimental project publication data.

For updates and more information, visit the PNNL Soil Microbiome SFA homepage.

Related Resources

        Federal Acknowledgements

        This research was supported by the Department of Energy Office of Biological and Environmental Research (BER) and is a contribution of the Scientific Focus Area ‘Phenotypic response of the soil microbiome to environmental perturbations’. PNNL is operated for the DOE by Battelle Memorial Institute under Contract DE-AC05-76RLO1830.

         

        (This page was prepared by LN Anderson)

        Last updated on 2024-06-03

        Project status

        Active
        English
        Datasets (23)
        Publications (14)
        Elias Zegeye
        Colin Brislawn
        Yuliya Farris
        Sarah J. Fansler
        Kirsten Hofmockel
        Janet K. Jansson
        Aaron Wright
        Emily Graham
        Dan Naylor
        Ryan McClure
        Hans Bernstein
        William C Nelson
        Lindsey N. Anderson
        Janet K. Jansson
        Ruonan Wu
        Jason McDermott
        Sheryl L. Bell
        Ari Jumpponen
        Sarah J. Fansler
        Kimberly J. Tyrrell
        Yuliya Farris
        Kirsten Hofmockel
        Arunima Bhattacharjee
        Lindsey N. Anderson
        Andrea Porras-Alfaro
        Ari Jumpponen
        Kirsten Hofmockel
        Janet K. Jansson
        Dr Christopher R Anderton
        William C Nelson
        Ryan McClure
        Dan Naylor
        Yuliya Farris
        Michelle R Davison
        Sarah J. Fansler
        Kirsten Hofmockel
        Janet K. Jansson
        Arunima Bhattacharjee
        Lindsey N. Anderson
        William C Nelson
        Ari Jumpponen
        Janet K. Jansson
        Kirsten Hofmockel
        Dr Christopher R Anderton
        Dan Naylor
        Sarah J. Fansler
        William C Nelson
        Kirsten Hofmockel
        Janet K. Jansson
        Ryan McClure
        Ruonan Wu
        Michelle R Davison
        William C Nelson
        Emily Graham
        Sarah J. Fansler
        Yuliya Farris
        Jason McDermott
        Kirsten Hofmockel
        Janet K. Jansson
        Sheryl L. Bell
        Ruonan Wu
        Michelle R Davison
        Jason McDermott
        Kirsten Hofmockel
        Janet K. Jansson
        Janet K. Jansson
        Kirsten Hofmockel
        Ryan McClure
        Dan Naylor
        Sneha P Couvillion
        Carrie D Nicora
        Katherine Naasko
        Ryan McClure
        Yuliya Farris
        William C Nelson
        Hyun-Seob Song
        Sneha P Couvillion
        Janet K. Jansson
        Kirsten Hofmockel
        Emily Graham
        Ruonan Wu
        Janet K. Jansson
        Jason McDermott
        Kirsten Hofmockel
        People (9)

        As Integrative Research Scientist, Dr. Hofmockel develops the overall science and technology strategy for EMSL in collaboration with the Deputy Directors. Responsible for EMSL’s Strategic Science Area in collaboration with the Deputy Directors. Is the interface with BER and the user community for...

        Publications: 2018 Khan NE, Y Maezato, RS McClure, CJ Brislawn, JM Mobberley, NG Isern, WB Chrisler, LM Markillie, BM Barney, HS Song, WC Nelson, and HC Bernstein. 2018. "Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture." Scientific...

        Staff Scientist at Pacific Northwest National Laboratory

        Earth Scientist Emily Graham is an quantitative ecosystem ecologist in the Biological Sciences Group at PNNL and is part of the Ecosystem Science Team. She is co-principal investigator of the Subsurface Biogeochemical Research Science Focus Area (SFA) and a key member of PNNL’s soil microbiome SFA...

        Materials Scientist and Bioengineer with extensive experience in Microfabrication, Biofilm engineering, Microfluidics and Microbiology assay development. Primary areas of interest include photolithography, microfluidics, Biological imaging and Biomaterials.

        Dr. Nelson is a computational scientist at PNNL. Since coming to PNNL, he has focused on methods to determine precise understanding of microbial community structure and function through the resolution of individual genome sequences from metagenomic data, and exploration of variation between...

        Sneha Couvillion’s current research focuses on deciphering microbial metabolic activity and interactions using a combination of powerful mass-spectrometry (MS)-based omics methods (metabolomics, lipidomics, and proteomics) in a variety of environmental and human health related projects. Expertise...

        Hyun Song’s research is directed toward developing modeling and computational tools for the simulation of cellular metabolism and microbial community dynamics. His research interest in metabolic modeling includes 1) omics data-guided estimation of flux distribution in a genome-scale metabolic...

        Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

        Data Sources (12)
        Methods (1)
        Resources (2)