Dataset - Omics, Genomics, Whole genome sequencing (WGS) KS4A-IsoG.1.0_FspDS682 (Fungal Monoisolate Genome, KS)

Data Sample

ReadMe_KS4A-IsoG.1.0_FspDS682_1.pdf
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https://doi.org/10.25584/KS4AIsoGFspDS682/1635527
Biology
Earth System Science
Fungi
Soil Microbiology
Genomics
Whole Genome Sequencing

Please cite as: Bhattacharjee A., L.N. Anderson, T.D. Alfaro, A. Porras-Alfarro, A. Jumpponen, K.S. Hofmockel, and J.K. Jansson, et al. 2020. KS4A-IsoG.1.0_FspDS682 (Fungal Monoisolate Genome, KS). [Data Set] PNNL DataHub. https://doi.org/10.25584/KS4AIsoGFspDS682/1635527

The novel fungal strain, Fusarium sp. DS 682, was isolated from the rhizosphere of the perennial grass, Bouteloua gracilis, at the Konza Prairie Biological Station in Kansas. This fungal strain is common across North American grasslands and is resilient to environmental fluctuations. The draft genome is estimated to be 97.2% complete.

 

Genomic sequencing of one or more organisms, or genomes in general, such as meta-information on genomes, genome projects, gene names of a given organism within a natural environment. The version described in this paper is the first version. Dataset download contains raw read sequencing files, assembly files, functional annotations, MIGS.eu.soil.5.0 metadata information, and a dataset “Read Me” file.

Data Package Resource Files:

  • ReadMe_KS4A-IsoG.1.0_FspDS682.pdf (package metadata)
  • MIGS.eu.soil.5.0_KS4A-IsoG.1.0_FspDS682.xlsx (sample metadata)

 

Items below available from Download Button:

  1. KS4A-IsoG.1.0_FspDS682 Functional Annotations [7.5 GB; 2 items]
  2. KS4A-IsoG.1.0_FspDS682 Assembly [55.9 MB; 2 items]
  3. KS4A-IsoG.1.0_FspDS682 Raw Reads [31.8 GB; 2 items]

 

Data Relationships

Parent Metagenome: KS-TmG.1.0

Omics Dataset: KS4A-Omics1.0_FspDS682

 

Experimental Data Accessions

English
Projects (1)
PNNL Soil Microbiome SFA
Datasets (1)
KS4A-Omics1.0_FspDS682 (Fungal Monoisolate Multi-Omics Proteome, KS)
Publications (1)
Draft Genome of Fusarium sp. strain DS 682, a novel Fungal isolate from the Grass Rhizosphere
People (2)
Jason McDermott

Dr. Jason McDermott, senior research scientist, has extensive research experience in molecular and structural virology and data resource design, data integration and prediction of biological networks, bridging experimental and computational biology. Currently, his research interests include data...

Lindsey N. Anderson

Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

Data Sources (1)
Illumina HiSeq X Sequencing System