EyeSea software is available at https://github.com/pnnl/EyeSea

Dr. Gao obtained her Ph.D degree in Chemistry from institute of chemistry, Chinese Academy of Science. His Ph.D research focused on multiscale modeling of morphology and properties of polymeric materials, polymer processing and unveiling the process–properties relationships. (atomic to coarse...

pmartR Software Overview The pmartR package provides a single software tool for QC (filtering and normalization), exploratory data analysis (EDA), and statistical analysis (robust to missing data) and includes numerous visualization capabilities of mass spectrometry (MS) omics data (proteomic...

Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson Snekmer: A scalable pipeline for protein sequence fingerprinting using amino acid recoding (AAR) Snekmer is a software package designed to reduce the representation of protein sequences by combining amino acid reduction (AAR) with the kmer...

Sara Gosline received BA in Computer Science from Columbia University and spent two years working in software before returning to graduate school full time. She received her Masters and PhD in Computer Science from McGill University with a specialty in Bioinformatics and then moved to the...

Biography Kelly is a senior data scientist in the Computational Biology group within the Biological Sciences Division at Pacific Northwest National Laboratory (PNNL). After earning a MS in Biostatistics from the University of Washington in 2012, she worked at a cancer research company for two years...

David Degnan is a biological data scientist who develops bioinformatic and statistical pipelines for multi-omics data, specifically the fields of proteomics, metabolomics, and multi-omics (phenotypic) data integration. He has experience with top-down & bottom-up proteomics analysis, genomics &...

The EyeSea underwater video dataset was assembled for developing algorithms for detecting fish in real world underwater video data. The data were recorded as part of environmental monitoring efforts at three different water power sites. The Ocean Renewable Power Company (ORPC) data were recorded in...

This dataset contains time series data collected from devices and sensors in the PNNL Systems Engineering Building collected using the VOLTTRON platform. The data includes readings from HVAC, power, and lighting systems and was collected between March and July of 2018. This work was funded by the...

This dataset includes the results of high-fidelity, hardware in the loop experimentation on simulated models of representative electric and natural gas distribution systems with real cyber attack test cases. Such datasets are extremely important not only in understanding the system behavior during...

ProxyTSPRD profiles are collected using NVIDIA Nsight Systems version 2020.3.2.6-87e152c and capture computational patterns from training deep learning-based time-series proxy-applications on four different levels: models (Long short-term Memory and Convolutional Neural Network), DL frameworks...

Supporting data and code uploaded to DataHub for "How do the weather regimes drive wind speed and power production at the sub-seasonal to seasonal timescales over the CONUS?" Created by Ye Liu*, Sha Feng*, Yun Qian, Berg K Larry, Huilin Huang *POC: Ye Liu, Ye.Liu@pnnl.gov Sha Feng, sfeng@pnnl.gov --...

This dataset includes one baseline and three cybersecurity based scenarios utilizing the IEEE 9 Bus Model. This instantiation of the IEEE 9 model was built utilizing the OpalRT Simulator ePhasorsim module, with Bus 7 represented by hardware in the loop (HiL). The HiL was represented by two SEL351s...

The presentation and supporting information provide data on the performance of an engineering-scale cross-flow heat exchanger used in hydrothermal liquefaction (HTL). Temperature profiles are provide for the process of waste water treatment sludges and a food waste. The data can be used to model...

Inclusion levels of alternative splicing (AS) events of five different varieties (i.e. skipped exon (SE), retained intron (RI), alternative 5’ splice site (A5SS), alternative 3’ splice site (A3SS), and mutually exclusive exons (MXE)) were measured in human blood samples from two separate cohorts of...