The srpAnalytics modeling pipeline for the Superfund Research Program Analytics Portal.
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Code pertaining to the Soil Microbiome SFA Project publication data visualizations 'DNA viral diversity, abundance and functional potential vary across grassland soils with a range of historical moisture regimes' for processing publication data downloads.
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Many important application data streams can be modeled as a complex graph of entities, where each graph node or entity is associated with a multi-variate time-series. The overall system’s behavior is modeled as a dynamical system, and it evolves through structural changes in the graph, and/or...
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Emissions of anthropogenic aerosol and precursor compounds substantially alter the Earth’s radiative balance, change the oxidation capacity of the atmosphere, alter cloud processes and precipitation amounts, and result in significant impacts on human health and ecosystems. One of the primary tools...
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The Sequel II System Sequencer is a high-throughput DNA sequencer machine developed and manufactured by PacBio , and is designed for high throughput, production-scale sequencing laboratories. Originally released in 2015, the Sequel system provides Single Molecule, Real-Time (SMRT) sequencing core...
The Human Islet Research Network (HIRN) is a large consortia with many research projects focused on understanding how beta cells are lost in type 1 diabetics (T1D) with a goal of finding how to protect against or replace the loss of functional beta cells. The consortia has multiple branches of...
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The following R source code was used for plotting figures of the viral communities detected from three grasslands soil metagenomes with a historical precipitation gradient ( WA-TmG.2.0 , KS-TmG.2.0 , IA-TmG.2.0 ) from project publication 'DNA viral diversity, abundance and functional potential vary...
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Fusarium sp. DS682 Proteogenomics Statistical Data Analysis of SFA dataset download: 10.25584/KSOmicsFspDS682/1766303 . GitHub Repository Source: https://github.com/lmbramer/Fusarium-sp.-DS-682-Proteogenomics MaxQuant Export Files (txt) Trelliscope Boxplots (jsonp) Fusarium Report (.Rmd, html)...
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Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson PNNL DataHub NIAID Program Project: Modeling Host Responses to Understand Severe Human Virus Infections, Multi-Omic Viral Dataset Catalog Collection Background The National Institute of Allergy and Infectious Diseases (NIAID) "Modeling Host...
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Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson Omics-LHV Profiling of Host Response to MERS-CoV Virus Infection Background Middle East Respiratory Syndrome coronavirus ( MERS-CoV ), part of the Coronaviridae family, is classified as a Category C priority pathogen by the National Institute...
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Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson Omics-LHV Profiling of Host Response to Ebola Virus Infection Background Ebola virus ( EBOV ) is a high risk biological agent, belonging to the Flaviviridae family, and is classified as a Category A priority pathogen by the National Institute...
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