Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson MERS-CoV Experiment MCL004 Metadata The purpose of this experiment was to evaluate the host response to MERS-CoV virus infection. Sample data was obtained from human lung adenocarcinoma cells (Calu-3) and processed for genome binding/occupancy...

Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson MERS-CoV Experiment MCL005 Metadata The purpose of this experiment was to evaluate the human host epigenetic response to MERS-CoV virus infection. Samples were obtained from human lung adenocarcinoma cells (Calu-3) and processed for...

Omics-LHV, West Nile Experiment WCD003 The purpose of this West Nile experiment was to obtain samples for omics analysis in mouse dendritic cell response to wild-type West Nile virus (WNV). Overall Design: Mouse dendritic cells (2 x 10^5) were treated with wild-type WNV and collected in parallel...

Omics-LHV, West Nile Experiment WGCN004 The purpose of this West Nile experiment was to obtain samples for omics analysis in primary mouse granule neuron cells infected with wild type West Nile virus (WNV-NY99 clone 382, WNVWT) and mutant virus (WNVE218A). Overall Design: Granule cell neurons from...

Omics-LHV, West Nile Experiment WCN004 The purpose of this West Nile experiment was to obtain samples for omics analysis in mouse cerebral cortex neurons in response to wild-type West Nile Virus (WNV; WNV-NY99 382) and mutant WNV-E218A (WNV-NY99 382) viral infection. Overall Design: Mouse cortical...

Assembly product (viral contigs and MAGs) includes the dereplicated viral contigs and the finalized MAGs Note: ADDENDUM LINK REQUIRED for full download https://g-83fdd0.1beed.03c0.data.globus.org/MG_assembly_coassemblies.tar

Please cite as : Wu R., M.R. Davison, W.C. Nelson, M.L. Smith, M.S. Lipton, J.K. Jansson, and R.S. McClure, et al. 2023. HiC manuscript: bulk metagenomic data_MG_raw Upload. [Data Set] PNNL DataHub. https://doi.org/10.25584/1922087 The raw bulk metagenomic data were trimmed and de-novo assembled...

The raw metatranscriptome data collected along the course of metaphenome incubation were trimmed and quality controlled.

Hi-C Viral Host Links: virus-host associations indicated by Hi-C sequencing were processed by Phase Genomics by folowing the protocal, https://www.biorxiv.org/content/10.1101/2021.06.14.448389v1.full

Basic Metadata Instrument ID 59534010 Instrument Name BEND Model Project ID 595341002 Project Name Energy Water Nexus Release Date 2019-04-23T15:35:09 Release State released Release State Display Released Submitted 2019-04-23T22:34:49 Submitter ID 5324928 Submitter Name Casey Burleyson Internal...

Basic Metadata Instrument ID 59534013 Instrument Name Agent-based energy-water Model Project ID 595341002 Project Name Energy Water Nexus Release Date 2020-04-28T08:41:00 Release State released Release State Display Released Submitted 2020-04-28T15:38:40 Submitter ID 30807 Submitter Name W David...

Basic Metadata Instrument ID 59534010 Instrument Name BEND Model Project ID 595341002 Project Name Energy Water Nexus Release Date 2018-12-05T21:50:45 Release State released Release State Display Released Submitted 2018-12-05T20:28:24 Submitter ID 5324928 Submitter Name Casey Burleyson Internal...

Basic Metadata Instrument ID 59534010 Instrument Name BEND Model Project ID 595341002 Project Name Energy Water Nexus Release Date 2019-08-27T16:50:04 Release State released Release State Display Released Submitted 2019-08-27T23:49:05 Submitter ID 8697218 Submitter Name Benjamin GT Stuermer Internal...

Basic Metadata Instrument ID 59534015 Instrument Name WRF Model Project ID 595341001 Project Name Land Use Land Cover Change Release Date 2019-09-17T06:08:39 Release State released Release State Display Released Submitted 2019-09-17T13:05:27 Submitter ID 10000000 Submitter Name Pouya Vahmani...

Basic Metadata Instrument ID 59534010 Instrument Name BEND Model Project ID 595341002 Project Name Energy Water Nexus Release Date 2020-05-08T09:27:48 Release State released Release State Display Released Submitted 2020-05-08T16:27:14 Submitter ID 5324928 Submitter Name Casey Burleyson Internal...