The srpAnalytics modeling pipeline for the Superfund Research Program Analytics Portal.
Filter results
Category
- (-) Biology (28)
- (-) Chemical & Biological Signatures Science (1)
- Scientific Discovery (41)
- Microbiome Science (10)
- Computational Research (8)
- Chemistry (6)
- Earth System Science (6)
- Integrative Omics (6)
- Human Health (3)
- Computational Mathematics & Statistics (2)
- Data Analytics & Machine Learning (1)
- Ecosystem Science (1)
- National Security (1)
- Plant Science (1)
- Weapons of Mass Effect (1)
Software Type
Tags
- Mass Spectrometry (7)
- Multi-Omics (2)
- Omics (2)
- PerCon SFA (2)
- Proteomics (2)
- Software Data Analysis (2)
- Synthetic Biology (2)
- Activity-Based Protein Profiling (1)
- Bacterial Persistence (1)
- Bacterial Signaling (1)
- Bioenergy Production (1)
- Chemical Biology (1)
- Chemical Probes (1)
- Data Analysis (1)
- DNA Sequence Analysis (1)
- Functional Annotation Analysis (1)
- Health (1)
- Kmers (1)
- Lipidomics (1)
- Metabolic Networks (1)
- metabolomics (1)
- Output Databases (1)
- Python (1)
- RNA Sequence Analysis (1)
- Snakemake (1)
- Statistics (1)
- Synthetic Chemistry (1)
- Virology (1)
- Virus (1)
- Viruses (1)
Code pertaining to the Soil Microbiome SFA Project publication data visualizations 'DNA viral diversity, abundance and functional potential vary across grassland soils with a range of historical moisture regimes' for processing publication data downloads.
Category
Data Science & Biostatistics
Category
Dr. Paul Piehowski is the Proteomics team leader for PNNL’s Environmental and Molecular Sciences Division and the Environmental Molecular Sciences Laboratory (EMSL) user program. Piehowski is an analytical chemist whose research is focused on the application of mass spectrometry to biological...
Category
LIQUID Software Overview LIQUID provides users with the capability to process high throughput data and contains a customizable target library and scoring model per project needs. The graphical user interface provides visualization of multiple lines of spectral evidence for each lipid identification...
Category
pmartR Software Overview The pmartR package provides a single software tool for QC (filtering and normalization), exploratory data analysis (EDA), and statistical analysis (robust to missing data) and includes numerous visualization capabilities of mass spectrometry (MS) omics data (proteomic...
The following R source code was used for plotting figures of the viral communities detected from three grasslands soil metagenomes with a historical precipitation gradient ( WA-TmG.2.0 , KS-TmG.2.0 , IA-TmG.2.0 ) from project publication 'DNA viral diversity, abundance and functional potential vary...
Category
Fusarium sp. DS682 Proteogenomics Statistical Data Analysis of SFA dataset download: 10.25584/KSOmicsFspDS682/1766303 . GitHub Repository Source: https://github.com/lmbramer/Fusarium-sp.-DS-682-Proteogenomics MaxQuant Export Files (txt) Trelliscope Boxplots (jsonp) Fusarium Report (.Rmd, html)...
Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson Snekmer: A scalable pipeline for protein sequence fingerprinting using amino acid recoding (AAR) Snekmer is a software package designed to reduce the representation of protein sequences by combining amino acid reduction (AAR) with the kmer...
Category
Category
Category
Biography Ernesto Nakayasu is a senior research scientist focused on understanding molecular mechanisms of diseases. Nakayasu has been applying systems biology and mass spectrometry-based omics measurements to study how pathogens and metabolic alterations cause human diseases; the goal is to...
Category
PerCon SFA, Co-Investigator Vivian Lin earned her PhD in organic chemistry from the University of California, Berkeley with Professor Chris Chang, developing fluorescent probes for imaging redox active small molecules. Afterward, she traveled to Switzerland for a postdoctoral fellowship in the...