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Dataset
Omics-Lethal Human Viruses, Ebola Experiment EIHH001

Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson Ebola Virus Experiment EIHH001 This experiment evaluated Immortalized Human Hepatocyte ( IHH ) cell line host response to wild-type Ebola viruses Zaire Ebola (ZEBOV '76) and Reston Ebola (REBOV '08) viral infection. Processed Transcriptome...

Biology
Human Health
Integrative Omics
Dataset
Omics-Lethal Human Viruses, Ebola Experiment EIHH002

Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson Ebola Virus Experiment EIHH002 This experiment evaluated Immortalized Human Hepatocyte ( IHH ) cell line host response to response to genetically-reconstructed Zaire Ebola virus infection. Processed Transcriptome Data Unavailable

Biology
Human Health
Integrative Omics
Publication
Selection, Succession, and Stabilization of Soil Microbial Consortia
Soil microorganisms play fundamental roles in cycling of soil carbon, nitrogen, and other nutrients, yet we have a poor understanding of how soil microbiomes are shaped by their nutritional and physical environment. In this study, we investigated the successional dynamics of a soil microbiome during...
Earth System Science
Biology
Publication
Draft Genome of Fusarium sp. strain DS 682, a novel Fungal isolate from the Grass Rhizosphere
The novel fungal strain, Fusarium sp. DS 682, was isolated from the rhizosphere of the perennial grass, Bouteloua gracilis , at the Konza Prairie Biological Station in Kansas. This fungal strain is common across North American grasslands and is resilient to environmental fluctuations. The draft...
Earth System Science
Biology
Publication
Terabase Metagenome Sequencing of Grassland Soil Microbiomes
As part of the Pacific Northwest National Laboratory’s (PNNL) Science Focus Area program, we are investigating the impact of environmental change on microbial community function in grassland soils. Three grassland soils, representing different moisture regimes, were selected for ultra-deep...
Earth System Science
Biology
Publication
Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome
The soil microbiome is central to the cycling of carbon and other nutrients and to the promotion of plant growth. Despite its importance, analysis of the soil microbiome is difficult due to its sheer complexity, with thousands of interacting species. Here, we reduced this complexity by developing...
Biology
Earth System Science
Dataset
Omics-Lethal Human Viruses, Influenza A Experiment IM104

Influenza A Experiment IM104 Processed Omics Data Unavailable This Influenza experiment evaluated mouse lung expression after etoposide treatment and infection with a pandemic H1N1 influenza strain. Related Experimental Data BioProject: PRJNA382278 GEO: GSE97555 (mRNA transcriptome response)...

Biology
Human Health
Integrative Omics
Publication
DNA Viral Diversity, Abundance, and Functional Potential Vary across Grassland Soils with a Range of Historical Moisture Regimes

"DNA Viral Diversity, Abundance, and Functional Potential Vary across Grassland Soils with a Range of Historical Moisture Regimes" Soil viruses are abundant, but the influence of the environment and climate on soil viruses remains poorly understood. Here, we addressed this gap by comparing the...

Biology
Earth System Science
Dataset
Omics-Lethal Human Viruses, Interferon-Stimulated Response Experiment IFNaCL001

Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson Interferon Experiment IFNaCL001 The purpose of this experiment was to evaluate the host interferon-stimulated cellular response to interferon alpha (IFNα) treatment. Sample data was obtained from human lung adenocarcinoma cells (Calu-3)...

Biology
Human Health
Integrative Omics
Dataset
GORDIAN Synthetic Data

This data was generated by the organization GORDIAN. Activities can be phone calls, transactions, or any other type of communications. Most of the files are of the type .csv; and can be opened in a text editor. A description of the data and how to read it can be found in the html files for the...

Dataset
IvySys Synthetic Data

This data was generated by the organization IvySys. Activities can be phone calls, transactions, or any other type of communications. Most of the files are of the type .edges, .rdf, or .csv; but all can be opened in a text editor. A good introduction to this data can be found in \Tutorial1\MAA...

Computing & Analytics
Dataset
V4 portion of data
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V4.0 (June 2018)
Dataset
V5 portion of data
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V5.0 (September 2018)
Dataset
V6 portion of data
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V6.0 (December 2018)
Dataset
V7 portion of data
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V7.0 (May 2019)