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Dataset
Omics-Lethal Human Viruses, Ebola Experiment EIHH001

Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson Ebola Virus Experiment EIHH001 This experiment evaluated Immortalized Human Hepatocyte ( IHH ) cell line host response to wild-type Ebola viruses Zaire Ebola (ZEBOV '76) and Reston Ebola (REBOV '08) viral infection. Processed Transcriptome...

Biology
Human Health
Integrative Omics
Dataset
Omics-Lethal Human Viruses, Ebola Experiment EIHH002

Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson Ebola Virus Experiment EIHH002 This experiment evaluated Immortalized Human Hepatocyte ( IHH ) cell line host response to response to genetically-reconstructed Zaire Ebola virus infection. Processed Transcriptome Data Unavailable

Biology
Human Health
Integrative Omics
Publication
Selection, Succession, and Stabilization of Soil Microbial Consortia
Soil microorganisms play fundamental roles in cycling of soil carbon, nitrogen, and other nutrients, yet we have a poor understanding of how soil microbiomes are shaped by their nutritional and physical environment. In this study, we investigated the successional dynamics of a soil microbiome during...
Earth System Science
Biology
Publication
Draft Genome of Fusarium sp. strain DS 682, a novel Fungal isolate from the Grass Rhizosphere
The novel fungal strain, Fusarium sp. DS 682, was isolated from the rhizosphere of the perennial grass, Bouteloua gracilis , at the Konza Prairie Biological Station in Kansas. This fungal strain is common across North American grasslands and is resilient to environmental fluctuations. The draft...
Earth System Science
Biology
Dataset
Omics-Lethal Human Viruses, MERS-CoV Experiment MDC001

MERS-CoV Experiment MDC001 Processed Omics Data Unavailable This experiment evaluated primary human dendritic cells infected with a wild type MERS-CoV (icMERS) virus. Related Experimental Data BioProject: PRJNA315103 GEO: GSE79172 (mRNA transcriptome response) Acknowledgment of Federal Funding The...

Biology
Human Health
Integrative Omics
Publication
Terabase Metagenome Sequencing of Grassland Soil Microbiomes
As part of the Pacific Northwest National Laboratory’s (PNNL) Science Focus Area program, we are investigating the impact of environmental change on microbial community function in grassland soils. Three grassland soils, representing different moisture regimes, were selected for ultra-deep...
Earth System Science
Biology
Publication
Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome
The soil microbiome is central to the cycling of carbon and other nutrients and to the promotion of plant growth. Despite its importance, analysis of the soil microbiome is difficult due to its sheer complexity, with thousands of interacting species. Here, we reduced this complexity by developing...
Biology
Earth System Science
Dataset
Omics-Lethal Human Viruses, Influenza A Experiment IM104

Influenza A Experiment IM104 Processed Omics Data Unavailable This Influenza experiment evaluated mouse lung expression after etoposide treatment and infection with a pandemic H1N1 influenza strain. Related Experimental Data BioProject: PRJNA382278 GEO: GSE97555 (mRNA transcriptome response)...

Biology
Human Health
Integrative Omics
Project
Synthetic Data and Graph Generation for Modeling Adversarial Activity - IvySys

This data is a model of synthetic adversarial activity surrounded by noise and was funded by DARPA. The various versions include gradually more complex networks of activities.

Computing & Analytics

  1. Datasets

    1
Project
VAST Challenge 2019: Disaster at St. Himark!
The VAST Challenge 2019 presents three mini-challenges and a grand challenge for you to apply your visual analytics research and technologies to help a city grapple with the aftermath of an earthquake that damages their nuclear power plant. These challenges are open to participation by individuals...
Computing & Analytics

  1. Datasets

    1
Project
Synthetic Data and Graph Generation for Modeling Adversarial Activity - PNNL
This data is a model of synthetic adversarial activity surrounded by noise and was funded by DARPA. The various versions include gradually more complex networks of activities. This data was generated by PNNL. Activities can be phone calls, transactions, or any other type of communications. Most of...
Computing & Analytics

  1. Datasets

    7
Project
Synthetic Data and Graph Generation for Modeling Adversarial Activity - GORDIAN

This data is a model of synthetic adversarial activity surrounded by noise and was funded by DARPA. The various versions include gradually more complex networks of activities.

Computing & Analytics

  1. Datasets

    1
Person
Vivian Lin

PerCon SFA, Co-Investigator Vivian Lin earned her PhD in organic chemistry from the University of California, Berkeley with Professor Chris Chang, developing fluorescent probes for imaging redox active small molecules. Afterward, she traveled to Switzerland for a postdoctoral fellowship in the...

Scientific Discovery
Biology
Chemistry
Method
MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses

Last updated on 2024-03-21T18:47:20+00:00 by LN Anderson MPLEx Method Protocol for Integrative Single-Sample Processing for Subsequent Proteomic, Metabolomic, and Lipidomic Analyses Method Source Contributions LN Anderson , Data Curation The Metabolite, Protein and Lipid Extraction (MPLEx) method...

Scientific Discovery
Integrative Omics
Biology
Dataset
GORDIAN Synthetic Data

This data was generated by the organization GORDIAN. Activities can be phone calls, transactions, or any other type of communications. Most of the files are of the type .csv; and can be opened in a text editor. A description of the data and how to read it can be found in the html files for the...