Pending Review Microbiomes contribute to multiple ecosystem services by transforming organic matter in soil. Extreme shifts in the environment, such as drying-rewetting cycles during drought, can impact microbial metabolism of organic matter by altering their physiology and function. These...
Filter results
Content type
Tags
- (-) Biological and Environmental Research (2)
- (-) DNA Sequence Analysis (2)
- Omics (11)
- PerCon SFA (9)
- High Throughput Sequencing (8)
- Genomics (7)
- Machine Learning (6)
- Type 1 Diabetes (6)
- Autoimmunity (5)
- Sequencer System (5)
- Synthetic Biology (5)
- Biomarkers (4)
- Mass Spectrometry (4)
- Molecular Profiling (4)
- RNA Sequence Analysis (4)
- Mass spectrometry-based Omics (3)
- Predictive Modeling (3)
- Software Data Analysis (3)
- Statistical Expression Analysis (3)
- Amplicon Sequencing (2)
- Functional Annotation Analysis (2)
- Imaging (2)
- Kmers (2)
- Long Read Sequencer (2)
- Mass spectrometry data (2)
- Proteomics (2)
- Python (2)
- Soil Microbiology (2)
- Spectroscopy (2)
- Whole Genome Sequencing (2)
Christine H Chang, William C Nelson, Abby Jerger, Aaron T Wright, Robert G Egbert, Jason E McDermott, Snekmer: a scalable pipeline for protein sequence fingerprinting based on amino acid recoding, Bioinformatics Advances , Volume 3, Issue 1, 2023, vbad005, https://doi.org/10.1093/bioadv/vbad005...
Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson Snekmer: A scalable pipeline for protein sequence fingerprinting using amino acid recoding (AAR) Snekmer is a software package designed to reduce the representation of protein sequences by combining amino acid reduction (AAR) with the kmer...
The Phenotypic Response of the Soil Microbiome to Environmental Perturbations Project (Soil Microbiome SFA) at Pacific Northwest National Laboratory is a Genomic Sciences Program Science Focus Area (SFA) Project operating under the Environmental Microbiome Science Research Area. The Soil Microbiome...
Datasets
23
Fusarium sp. DS682 Proteogenomics Statistical Data Analysis of SFA dataset download: 10.25584/KSOmicsFspDS682/1766303 . GitHub Repository Source: https://github.com/lmbramer/Fusarium-sp.-DS-682-Proteogenomics MaxQuant Export Files (txt) Trelliscope Boxplots (jsonp) Fusarium Report (.Rmd, html)...
Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson PerCon SFA Project Publication Experimental Data Catalog The Persistence Control of Engineered Functions in Complex Soil Microbiomes Project (PerCon SFA) at Pacific Northwest National Laboratory ( PNNL ) is a Genomic Sciences Program...
Datasets
3