"Visualizing the Hidden Half: Plant-Microbe Interactions in the Rhizosphere" Plant roots and the associated rhizosphere constitute a dynamic environment that fosters numerous intra- and interkingdom interactions, including metabolite exchange between plants and soil mediated by root exudates and the...
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Elmore JR, Dexter GN, Baldino H, Huenemann JD, Francis R, Peabody GL 5th, Martinez-Baird J, Riley LA, Simmons T, Coleman-Derr D, Guss AM, Egbert RG. High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration. Sci Adv. 2023 Mar 10;9(10)...
Metabolite exchange between plant roots and their associated rhizosphere microbiomes underpins plant growth promotion by microbes. Sorghum bicolor is a cereal crop that feeds animals and humans and is used for bioethanol production. Its root tips exude large amounts of a lipophilic benzoquinone...
Data Source
The Sequel II System Sequencer is a high-throughput DNA sequencer machine developed and manufactured by PacBio , and is designed for high throughput, production-scale sequencing laboratories. Originally released in 2015, the Sequel system provides Single Molecule, Real-Time (SMRT) sequencing core...
Publication
Human infections caused by viral pathogens trigger a complex gamut of host responses that limit disease, resolve infection, generate immunity, and contribute to severe disease or death. Here, we present experimental methods and multi-omics data capture approaches representing the global host...
Category
Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson PerCon SFA Project Publication Experimental Data Catalog The Persistence Control of Engineered Functions in Complex Soil Microbiomes Project (PerCon SFA) at Pacific Northwest National Laboratory ( PNNL ) is a Genomic Sciences Program...
Datasets
3
This data is a model of synthetic adversarial activity surrounded by noise and was funded by DARPA. The various versions include gradually more complex networks of activities. This data was generated by PNNL. Activities can be phone calls, transactions, or any other type of communications. Most of...
Category
Datasets
7
The VAST Challenge 2019 presents three mini-challenges and a grand challenge for you to apply your visual analytics research and technologies to help a city grapple with the aftermath of an earthquake that damages their nuclear power plant. These challenges are open to participation by individuals...
Category
Datasets
1
Data Source
The Illumina MiSeq System Sequencer is a high-throughput DNA sequencer machine developed and manufactured by Illumina , and is designed for sequencing data acquisition using synthesis technology to provide an end-to-end solution (cluster generation, amplification, sequencing, and data analysis) in a...
Data Source
The Illumina HiSeq X System Sequencer is a high-throughput DNA sequencer machine developed and manufactured by Illumina , and is designed for high throughput, production-scale sequencing laboratories. Built off the HiSeq 2500 System, harnessing the patterned flow cell technology originally developed...
Dataset
St. Himark is a vibrant community located in the Oceanus Sea. Home to the world-renowned St. Himark Museum, beautiful beaches, and the Wilson Forest Nature Preserve, St. Himark is one of the region’s best cities for raising a family and provides employment across a number of industries including the...
Dataset
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V1.0 (September 2017) – Three preliminary channel background graphs with and without embedded signal patterns.
Dataset
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V2.0 (October 2017) – Preliminary channel background graph with embedded signal patterns at various sizes (~7K, ~50K, and ~100K nodes). Signal patterns have also been extracted...
Dataset
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V3.0 (March 2018) - Twelve examples of five-channel background graphs with embedded signal patterns at around ~1M nodes each. Multiple signal patterns have been embedded into each...
Dataset
Various graph datasets, documentation, and tools are provided here by the SDGG-MAA project. PNNL DARPA MAA Graph Dataset V4.0 (June 2018)