Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson Snekmer: A scalable pipeline for protein sequence fingerprinting using amino acid recoding (AAR) Snekmer is a software package designed to reduce the representation of protein sequences by combining amino acid reduction (AAR) with the kmer...
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Showing 16 - 30 of 86
Software
GridLAB-D™ is an open source project to develop the next generation power system simulation technology. It was initiated in 2004 by the US Department of Energy's Office of Electricity Delivery and Energy Reliability at the Pacific Northwest National Laboratory , and has been continued since in...
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Dr. Jason McDermott, senior research scientist, has extensive research experience in molecular and structural virology and data resource design, data integration and prediction of biological networks, bridging experimental and computational biology. Currently, his research interests include data...
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Janet Jansson is Chief Scientist for Biology in the Biological Sciences Division and a Laboratory Fellow at the Pacific Northwest National Laboratory (PNNL). Jansson has more than 30 years of experience in microbial ecology. Jansson earned an M.S.in Soil Microbiology at Colorado State University...
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Hyun Song’s research is directed toward developing modeling and computational tools for the simulation of cellular metabolism and microbial community dynamics. His research interest in metabolic modeling includes 1) omics data-guided estimation of flux distribution in a genome-scale metabolic...
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Aaron Wright leads the Chemical Biology & Exposure Sciences Group in the Biological Sciences Division at PNNL. His highly collaborative and diverse chemical biology research team is focused on gaining an improved functional and mechanistic understanding of biological processes including: (a)...
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Tom Metz is a Principal Investigator within the Integrative Omics group at PNNL and the Metabolomics Team Lead for a group of scientists that focuses on development and applications of high throughput metabolomics and lipidomics methods to various biological questions. He has worked to develop state...
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As Integrative Research Scientist, Dr. Hofmockel develops the overall science and technology strategy for EMSL in collaboration with the Deputy Directors. Responsible for EMSL’s Strategic Science Area in collaboration with the Deputy Directors. Is the interface with BER and the user community for...
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Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...
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Michelle Davison is a microbiologist with a love of challenging, creative, and multidisciplinary projects. She is interested in the role phage play in environmental systems, as well as the myriad ways they can be harnessed as tools. She has experience isolating, developing and working with non-model...
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Biography Dr. Mary Lipton is currently a Staff Scientist at the Pacific Northwest National Laboratory and Adjunct Professor at Washington State University-Tri-Cities in Richland and Adjunct Professor in the Institute for Biological Chemistry and Washington State University Pullman. She is nationally...
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Dr. Nelson’s background is in genomic analysis of microbial organisms. He spent 10 years at The Institute for Genomic Research (TIGR), first as a data analyst and then as the team lead for Microbial Annotation. He was involved in some of the earliest bacterial genome sequencing projects, including...
Person
Staff Scientist at Pacific Northwest National Laboratory
Person
Education Ph.D. 1998, Oregon State University. Forest Science. Area(s) of Specialization Mycology; fungal ecology; fungus-plant interactions. Research Focus My laboratory studies the environmental selection processes that dictate the extant community structures. Towards these goals, we have adopted...
Person
Publications: 2018 Stegen JC, TC Johnson, JK Fredrickson, MJ Wilkins, AE Konopka, WC Nelson, EV Arntzen, WB Chrisler, RK Chu, SJ Fansler, EB Graham, DW Kennedy, CT Resch, MM Tfaily, and JM Zachara. 2018. "Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial...