This data package contains processed LC-MS proteomics results and analysis scripts associated with the paper "Assessing Degenerate Peptide Resolution Methods using a Ground Truth Dataset". In this study, we designed an artificial microbial community to create a ground truth, simulated metaproteomic...
Please cite as : JosuĂ© A. RodrĂguez-Ramos, Amy E. Zimmerman, Ruonan Wu, Sheryl Bell, Trinidad Alfaro, Kirsten Hofmockel, William C. Nelson. Soil DNA and RNA Virus Sequence Data Recovered Using Different Preparation Methods. https://doi.org/10.25584/2583337 This data is published under a CC0 license...
Please cite as : Robert E. Danczak, Sheryl Bell, Evan Warburton, Trinidad Alfaro, Kirsten Hofmockel, Amy E. Zimmerman, William C. Nelson, 2025. Bacterial/Fungal interaction multi-omics over a moisture gradient . [Data Set] PNNL DataHub. https://doi.org/10.25584/2574929 This data is published under a...
Dataset Description The goal of the experiment was to demonstrate that the optimized multiplexed multi-PTM profiling workflow can comprehensively and quantitatively capture dynamic changes in protein abundance, cysteine oxidation, phosphorylation, and acetylation in cytokine-induced inflammatory...
Energy insecurity affects most low-income households in the United States. Energy insecurity, which is characterized by a household’s inability to afford their energy needs, often leads to risky choices, causing other forms of insecurity including food and health. Although there are government...
Data package for Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon This data is published under a CC0 license . The authors encourage data reuse and request attribution by referencing the below citations for the data packages and associated manuscript. Please cite as...
Please cite as : McClure, R. and Janet Jansson. 2025. EVT 16s Data and Large Supplementary Files . [Data Set] PNNL DataHub. https://doi.org/10.25584/2530740. This data is published under a CC0 license . The authors encourage data reuse and request attribution by referencing the above citations for...
Dataset Description The purpose of this experiment was to evaluate the regulatory stress response of Oleaginous yeast species Rhodotorula toruloides NBRC 0880 (JGI strain IFFO0880 v4.0) under nitrogen-rich and nitrogen-limited conditions over time. Time course experimental samples (24, 48, and 72...
Created 2024-12-20T23:47:47+00:00 by LN Anderson ; Last updated 2025-05-09T15:55:34+00:00 S. elongatus PCC 7942 Circadian Control Bioproduction Metabolomics (PB-DP5) The purpose of this experiment was to evaluate how circadian clock regulation impacts carbon partitioning between storage, growth, and...
Created 2024-12-20T23:47:47+00:00 by LN Anderson ; Last updated 2025-05-09T15:55:34+00:00 S. elongatus PCC 7942 Circadian Control Bioproduction Transcriptomics (PB-DP3) The purpose of this experiment was to evaluate how circadian clock regulation impacts carbon partitioning between storage, growth...
This data has been submitted to the RSCB Protein Data Bank (PDB) under accession code 7TVP (V-Csn-E157Q chitohexaose complex).
This data has been submitted to the RSCB Protein Data Bank (PDB) under accession code 7TVO (V-Csn-E157Q).
Original data available on MassIVE under accession number MSV000086931 . Paper tentative title: Drought and wet-up causes significant remodeling of the soil lipidome Author list: Sneha Couvillion et al. We used lipidomics to capture the rapid metabolic response of the microbial community in an arid...
This data has been submitted to the RSCB Protein Data Bank (PDB) under accession code 7TVN (V-Csn-D148N).
This data has been submitted to the RSCB Protein Data Bank (PDB) under accession code 7TVL (V-Csn apo1).