RhizoGrid Indexed Sorghum Rhizosphere Multi-Omics pending public release Identification of spatially resolved biomarkers of drought in Sorghum bicolor rhizosphere molecular-microbe interactions using a novel root cartography "RhizoGrid" system for sampling plants under drought and control conditions...
Dataset Description The goal of the experiment was to demonstrate that the optimized multiplexed multi-PTM profiling workflow can comprehensively and quantitatively capture dynamic changes in protein abundance, cysteine oxidation, phosphorylation, and acetylation in cytokine-induced inflammatory...
Dataset Description The purpose of this experiment was to evaluate the regulatory stress response of Oleaginous yeast species Rhodotorula toruloides NBRC 0880 (JGI strain IFFO0880 v4.0) under nitrogen-rich and nitrogen-limited conditions over time. Time course experimental samples (24, 48, and 72...
Dataset Description The purpose of this experiment was to evaluate the human host cellular response to wild type human coronavirus strain 229E (HCoV-229E) infection. Sample data was obtained for mock-infected and immortalized human lung fibroblasts (MRC-5) (MOI 5). Whole cell lysates were collected...
Created on 2024-10-16T17:27:40+00:00 by LN Anderson ; Last updated 2025-08-01T15:13:46+00:00. S. elongatus PCC 7942 LiP and TPP Structural Proteomics (JM-PB-DP3) The purpose of this experiment was to investigate structural alterations in proteins involved in central carbon metabolism and...
Currently pending public release.
Currently pending public release.
Dataset Description The purpose of this experiment was to investigate how the interactions between APOA1 and APOA2 on the surface of high-density lipoproteins (HDL) impact particle function. Interactions were investigated on HDL isolated from human blood plasma using structural proteomics tools such...
Rapid remodeling of the soil lipidome in response to a drying-rewetting event - Multi-Omics Data Package DOI Data package contents reported here are the first version and contain pre- and post-processed data acquisition and subsequent downstream analysis files using various data source instrument...
Last updated on 2025-01-16T22:12:33+00:00 by LN Anderson Fungal Monoisolate Multi-Omics Data Package DOI "KS4A-Omics1.0_FspDS68" Molecular mechanisms underlying fungal mineral weathering and nutrient translocation in low nutrient environments remain poorly resolved, due to the lack of a platform for...
These GCAM v4.3 SSP-RCP-GCM Output Databases are made available under the Open Data Commons Attribution License: http://opendatacommons.org/licenses/by/1.0/ . GCAM v4.3 SSP-RCP-GCM plausible solution databases. Supplemental dataset to: Graham N.T., M.I. Hejazi, M. Chen, E. Davies, J.A. Edmonds, S.H...
The research goal of this project is to establish model synthetic microbial communities to understand the rules regulating their biological function in order to utilize them as next generation bioproduction platforms capable of reducing carbon and nitrogen footprints in biomanufacturing processes.
The science objective of this project is to apply structural proteomics technologies to map the molecular interactome.
The research objective of this project is to develop an integrative and automated multi-PTM profiling capability with deep proteome coverage.
Human infections caused by viral pathogens trigger a complex gamut of host responses that limit disease, resolve infection, generate immunity, and contribute to severe disease or death. Here, we present experimental methods and multi-omics data capture approaches representing the global host...