Christine H Chang, William C Nelson, Abby Jerger, Aaron T Wright, Robert G Egbert, Jason E McDermott, Snekmer: a scalable pipeline for protein sequence fingerprinting based on amino acid recoding, Bioinformatics Advances , Volume 3, Issue 1, 2023, vbad005, https://doi.org/10.1093/bioadv/vbad005...
Filter results
Category
- (-) Computational Research (5)
- (-) Microbiome Science (3)
- Biology (8)
- Scientific Discovery (8)
- Data Analytics & Machine Learning (3)
- Human Health (3)
- Computational Mathematics & Statistics (1)
- Computing & Analytics (1)
- Data Analytics & Machine Learning (1)
- Earth System Science (1)
- National Security (1)
Content type
Tags
- (-) RNA Sequence Analysis (4)
- (-) Predictive Modeling (3)
- Omics (10)
- PerCon SFA (9)
- High Throughput Sequencing (8)
- Genomics (7)
- Machine Learning (6)
- Type 1 Diabetes (6)
- Autoimmunity (5)
- Sequencer System (5)
- Synthetic Biology (5)
- Biomarkers (4)
- Mass Spectrometry (4)
- Molecular Profiling (4)
- Mass spectrometry-based Omics (3)
- Software Data Analysis (3)
- Statistical Expression Analysis (3)
- Amplicon Sequencing (2)
- Biological and Environmental Research (2)
- DNA Sequence Analysis (2)
- Functional Annotation Analysis (2)
- Imaging (2)
- Kmers (2)
- Long Read Sequencer (2)
- Mass spectrometry data (2)
- Proteomics (2)
- Python (2)
- Snakemake (2)
- Spectroscopy (2)
- Whole Genome Sequencing (2)
Metabolite exchange between plant roots and their associated rhizosphere microbiomes underpins plant growth promotion by microbes. Sorghum bicolor is a cereal crop that feeds animals and humans and is used for bioethanol production. Its root tips exude large amounts of a lipophilic benzoquinone...
A major challenge in biotechnology and biomanufacturing is the identification of a set of biomarkers for perturbations and metabolites of interest. Here, we develop a data-driven, transcriptome-wide approach to rank perturbation-inducible genes from time-series RNA sequencing data for the discovery...
The Human Islet Research Network (HIRN) is a large consortia with many research projects focused on understanding how beta cells are lost in type 1 diabetics (T1D) with a goal of finding how to protect against or replace the loss of functional beta cells. The consortia has multiple branches of...
Datasets
0
The Phenotypic Response of the Soil Microbiome to Environmental Perturbations Project (Soil Microbiome SFA) at Pacific Northwest National Laboratory is a Genomic Sciences Program Science Focus Area (SFA) Project operating under the Environmental Microbiome Science Research Area. The Soil Microbiome...
Datasets
23
Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson Snekmer: A scalable pipeline for protein sequence fingerprinting using amino acid recoding (AAR) Snekmer is a software package designed to reduce the representation of protein sequences by combining amino acid reduction (AAR) with the kmer...
Machine learning is a core technology that is rapidly advancing within type 1 diabetes (T1D) research. Our Human Islet Research Network (HIRN) grant is studying early cellular response initiating β cell stress in T1D through the generation of heterogenous low- and high-throughput molecular...
Datasets
3
Inclusion levels of alternative splicing (AS) events of five different varieties (i.e. skipped exon (SE), retained intron (RI), alternative 5’ splice site (A5SS), alternative 3’ splice site (A3SS), and mutually exclusive exons (MXE)) were measured in human blood samples from two separate cohorts of...