The Community Land Model (CLM) is an effective tool to simulate the biophysical and biogeochemical processes and their interactions with the atmosphere. Although CLM Version 5 (CLM5) constitutes various updates in these processes, its performance in simulating energy, water and carbon cycles over...
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"Visualizing the Hidden Half: Plant-Microbe Interactions in the Rhizosphere" Plant roots and the associated rhizosphere constitute a dynamic environment that fosters numerous intra- and interkingdom interactions, including metabolite exchange between plants and soil mediated by root exudates and the...
Pending Review Microbiomes contribute to multiple ecosystem services by transforming organic matter in soil. Extreme shifts in the environment, such as drying-rewetting cycles during drought, can impact microbial metabolism of organic matter by altering their physiology and function. These...
Elmore JR, Dexter GN, Baldino H, Huenemann JD, Francis R, Peabody GL 5th, Martinez-Baird J, Riley LA, Simmons T, Coleman-Derr D, Guss AM, Egbert RG. High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration. Sci Adv. 2023 Mar 10;9(10)...
Publication
The rhizosphere represents a dynamic and complex interface between plant hosts and the microbial community found in the surrounding soil. While it is recognized that manipulating the rhizosphere has the potential to improve plant fitness and health, engineering the rhizosphere microbiome through...
Agriculture is the largest source of greenhouse gases (GHG) production. Conversion of nitrogen fertilizers into more reduced forms by microbes through a process known as biological nitrification drives GHG production, enhances proliferation of toxic algal blooms, and increases cost of crop...
Metabolite exchange between plant roots and their associated rhizosphere microbiomes underpins plant growth promotion by microbes. Sorghum bicolor is a cereal crop that feeds animals and humans and is used for bioethanol production. Its root tips exude large amounts of a lipophilic benzoquinone...
Publication
A major challenge in biotechnology and biomanufacturing is the identification of a set of biomarkers for perturbations and metabolites of interest. Here, we develop a data-driven, transcriptome-wide approach to rank perturbation-inducible genes from time-series RNA sequencing data for the discovery...
HDF5 file containing 10,000 hydraulic transmissivity inputs and the corresponding hydraulic pressure field outputs for a two-dimensional saturated flow model of the Hanford Site. The inputs are generated by sampling a 1,000-dimensional Kosambi-Karhunen-Loève (KKL) model of the transmissivity field...
Dataset
This data was generated by the organization IvySys. Activities can be phone calls, transactions, or any other type of communications. Most of the files are of the type .edges, .rdf, or .csv; but all can be opened in a text editor. A good introduction to this data can be found in \Tutorial1\MAA...
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Comprehensive assessment of climate datasets created by statistical or dynamical models is important for effectively communicating model projection and associated uncertainty to stakeholders and decision-makers. The Department of Energy FACETS project aims to foster such communication through...
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The dataset consists of model outputs (CLM45BGC, CLM5BGC, and CLM5SP) There are three CLM simulations associated with Cheng et al. 2020, namely CLM4.5 in biogeochemistry mode (CLM45BGC), CLM5 in biogeochemistry mode (CLM5BGC), and CLM5in satellite phenology mode (CLM5SP). The monthly, daily and...
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Dataset
Dataset The dataset will consist of: About 1200 news stories from the Alderwood Daily News plus a few other items collected by the previous investigators A few photos A few maps of Alderwood and vicinity (in bitmap image form) A few files with other mixed materials, e.g. a spreadsheet with voter...
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Dataset
It is Fall of 2004 and one of your analyst colleagues has been called away from her current tasks to an emergency. The boss has given you the assignment of picking up her investigation and completing her task. She has been asked to pursue a line of investigation into some unexpected activities...
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Dataset
Mini Challenge 1: Wiki Editors The Paraiso movement is controversial and is having considerable social impact in a specific area of the world. We have extracted a segment of the Paraiso (the movement) Wikipedia edits page. Please note this is not the Paraiso Manifesto Wiki page which is part of the...
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