Pending Review Microbiomes contribute to multiple ecosystem services by transforming organic matter in soil. Extreme shifts in the environment, such as drying-rewetting cycles during drought, can impact microbial metabolism of organic matter by altering their physiology and function. These...
Filter results
Content type
Tags
- (-) Synthetic Biology (5)
- (-) Sorghum bicolor (2)
- (-) DOE (1)
- (-) Lipidomics (1)
- Omics (9)
- PerCon SFA (9)
- High Throughput Sequencing (8)
- Genomics (7)
- Sequencer System (5)
- Mass Spectrometry (3)
- A. pittii SO1 (2)
- Amplicon Sequencing (2)
- Biological and Environmental Research (2)
- Imaging (2)
- Long Read Sequencer (2)
- Mass spectrometry data (2)
- Proteomics (2)
- RNA Sequence Analysis (2)
- Spectroscopy (2)
- Statistical Expression Analysis (2)
- Whole Genome Sequencing (2)
- Data Analysis (1)
- Environmental Microbiome Science (1)
- Genomic Sciences Program (1)
- Machine Learning (1)
- Mass Spectrometer (1)
- metabolomics (1)
- Output Databases (1)
- Science Focus Area Project (1)
- Soil Microbiology (1)
The rhizosphere represents a dynamic and complex interface between plant hosts and the microbial community found in the surrounding soil. While it is recognized that manipulating the rhizosphere has the potential to improve plant fitness and health, engineering the rhizosphere microbiome through...
Agriculture is the largest source of greenhouse gases (GHG) production. Conversion of nitrogen fertilizers into more reduced forms by microbes through a process known as biological nitrification drives GHG production, enhances proliferation of toxic algal blooms, and increases cost of crop...
Metabolite exchange between plant roots and their associated rhizosphere microbiomes underpins plant growth promotion by microbes. Sorghum bicolor is a cereal crop that feeds animals and humans and is used for bioethanol production. Its root tips exude large amounts of a lipophilic benzoquinone...
A major challenge in biotechnology and biomanufacturing is the identification of a set of biomarkers for perturbations and metabolites of interest. Here, we develop a data-driven, transcriptome-wide approach to rank perturbation-inducible genes from time-series RNA sequencing data for the discovery...
The Phenotypic Response of the Soil Microbiome to Environmental Perturbations Project (Soil Microbiome SFA) at Pacific Northwest National Laboratory is a Genomic Sciences Program Science Focus Area (SFA) Project operating under the Environmental Microbiome Science Research Area. The Soil Microbiome...
Datasets
23
Last updated on 2023-02-23T19:37:46+00:00 by LN Anderson PerCon SFA Project Publication Experimental Data Catalog The Persistence Control of Engineered Functions in Complex Soil Microbiomes Project (PerCon SFA) at Pacific Northwest National Laboratory ( PNNL ) is a Genomic Sciences Program...
Datasets
3
Last updated on 2023-03-21T18:35:22+00:00 by LN Anderson SAGE-RTP RT-PCR Amplicon Sequencing Barcode Count Analysis Promoter expression data for five bacterial species associated with the Serine recombinase Assisted Genome Engineering (SAGE) research project. Raw Measurement Data NCBI BioProject...