Pending Review Microbiomes contribute to multiple ecosystem services by transforming organic matter in soil. Extreme shifts in the environment, such as drying-rewetting cycles during drought, can impact microbial metabolism of organic matter by altering their physiology and function. These...
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Publication
A major challenge in biotechnology and biomanufacturing is the identification of a set of biomarkers for perturbations and metabolites of interest. Here, we develop a data-driven, transcriptome-wide approach to rank perturbation-inducible genes from time-series RNA sequencing data for the discovery...
HDF5 file containing 10,000 hydraulic transmissivity inputs and the corresponding hydraulic pressure field outputs for a two-dimensional saturated flow model of the Hanford Site. The inputs are generated by sampling a 1,000-dimensional Kosambi-Karhunen-Loève (KKL) model of the transmissivity field...
Dataset
Last updated on 2023-03-21T18:35:22+00:00 by LN Anderson SAGE-RTP RT-PCR Amplicon Sequencing Barcode Count Analysis Promoter expression data for five bacterial species associated with the Serine recombinase Assisted Genome Engineering (SAGE) research project. Raw Measurement Data NCBI BioProject...
Last updated on 2023-05-31T16:35:53+00:00 by LN Anderson PerCon SFA: Sequencing of Sorgoleone Promoting Rhizobacteria Isolates Whole genome sequencing (WGS) of sorgoleone utilizing rhizobacteria strains Pseudomonas sorgoleonovorans SO81 , Burkholderia anthina SO82 , and Acinetobacter pittii SO1 , as...
Last updated on 2024-04-19T19:12:08+00:00 by LN Anderson PerCon SFA: Profiling sorghum-microbe interactions with a specialized photoaffinity probe identifies key sorgoleone binders in Acinetobacter pitti Mass spectrometry-based global proteome analysis and SoDA-PAL photoaffinity probe labeled...
