"Visualizing the Hidden Half: Plant-Microbe Interactions in the Rhizosphere" Plant roots and the associated rhizosphere constitute a dynamic environment that fosters numerous intra- and interkingdom interactions, including metabolite exchange between plants and soil mediated by root exudates and the...
Filter results
Category
- (-) Microbiome Science (28)
- (-) Computing & Analytics (15)
- (-) Plant Science (2)
- Scientific Discovery (253)
- Biology (158)
- Earth System Science (118)
- Human Health (94)
- Integrative Omics (60)
- National Security (21)
- Computational Research (17)
- Energy Resiliency (10)
- Data Analytics & Machine Learning (8)
- Visual Analytics (6)
- Computational Mathematics & Statistics (5)
- Materials Science (5)
- Renewable Energy (5)
- Atmospheric Science (4)
- Chemical & Biological Signatures Science (4)
- Coastal Science (4)
- Data Analytics & Machine Learning (4)
- Weapons of Mass Effect (4)
- Chemistry (3)
- Cybersecurity (2)
- Distribution (2)
- Ecosystem Science (2)
- Electric Grid Modernization (2)
- Energy Efficiency (2)
- Energy Storage (2)
- Grid Cybersecurity (2)
- Solar Energy (2)
- Bioenergy Technologies (1)
- Computational Mathematics & Statistics (1)
- Grid Analytics (1)
- High-Performance Computing (1)
- Subsurface Science (1)
- Terrestrial Aquatics (1)
- Transportation (1)
- Wind Energy (1)
Tags
- PerCon SFA (8)
- Synthetic (5)
- Synthetic Biology (5)
- Omics (4)
- High Throughput Sequencing (3)
- Mass Spectrometry (3)
- A. pittii SO1 (2)
- Amplicon Sequencing (2)
- Biological and Environmental Research (2)
- Genomics (2)
- Imaging (2)
- Machine Learning (2)
- RNA Sequence Analysis (2)
- Soil Microbiology (2)
- Sorghum bicolor (2)
- Spectroscopy (2)
- Statistical Expression Analysis (2)
- Whole Genome Sequencing (2)
- Bioimaging (1)
- DOE (1)
- Environmental Microbiome Science (1)
- Genomic Sciences Program (1)
- High-Performance Computing (1)
- Lipidomics (1)
- metabolomics (1)
- Metagenomics (1)
- Proteomics (1)
- Science Focus Area Project (1)
- Transcriptomics (1)
- Viruses (1)
Pending Review Microbiomes contribute to multiple ecosystem services by transforming organic matter in soil. Extreme shifts in the environment, such as drying-rewetting cycles during drought, can impact microbial metabolism of organic matter by altering their physiology and function. These...
Elmore JR, Dexter GN, Baldino H, Huenemann JD, Francis R, Peabody GL 5th, Martinez-Baird J, Riley LA, Simmons T, Coleman-Derr D, Guss AM, Egbert RG. High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration. Sci Adv. 2023 Mar 10;9(10)...
The rhizosphere represents a dynamic and complex interface between plant hosts and the microbial community found in the surrounding soil. While it is recognized that manipulating the rhizosphere has the potential to improve plant fitness and health, engineering the rhizosphere microbiome through...
Agriculture is the largest source of greenhouse gases (GHG) production. Conversion of nitrogen fertilizers into more reduced forms by microbes through a process known as biological nitrification drives GHG production, enhances proliferation of toxic algal blooms, and increases cost of crop...
Metabolite exchange between plant roots and their associated rhizosphere microbiomes underpins plant growth promotion by microbes. Sorghum bicolor is a cereal crop that feeds animals and humans and is used for bioethanol production. Its root tips exude large amounts of a lipophilic benzoquinone...
A major challenge in biotechnology and biomanufacturing is the identification of a set of biomarkers for perturbations and metabolites of interest. Here, we develop a data-driven, transcriptome-wide approach to rank perturbation-inducible genes from time-series RNA sequencing data for the discovery...
HDF5 file containing 10,000 hydraulic transmissivity inputs and the corresponding hydraulic pressure field outputs for a two-dimensional saturated flow model of the Hanford Site. The inputs are generated by sampling a 1,000-dimensional Kosambi-Karhunen-Loève (KKL) model of the transmissivity field...
"Moisture modulates soil reservoirs of active DNA and RNA viruses" Soil is known to harbor viruses, but the majority are uncharacterized and their responses to environmental changes are unknown. Here, we used a multi-omics approach (metagenomics, metatranscriptomics and metaproteomics) to detect...
Two factors that are well-known to influence soil microbiomes are the depth of the soil as well as the level of moisture. Previous works have demonstrated that climate change will increase the incidence of drought in soils, but it is unknown how fluctuations in moisture availability affect soil...
Category
This data is a model of synthetic adversarial activity surrounded by noise and was funded by DARPA. The various versions include gradually more complex networks of activities.
Category
Datasets
1
The Phenotypic Response of the Soil Microbiome to Environmental Perturbations Project (Soil Microbiome SFA) at Pacific Northwest National Laboratory is a Genomic Sciences Program Science Focus Area (SFA) Project operating under the Environmental Microbiome Science Research Area. The Soil Microbiome...
Datasets
23
Category
Datasets
1
This data is a model of synthetic adversarial activity surrounded by noise and was funded by DARPA. The various versions include gradually more complex networks of activities.
Category
Datasets
1
Category
Datasets
7