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Showing 16 - 30 of 230
Dataset
Environmental matrix and moisture are key determinants of microbial phenotypes expressed in a reduced complexity soil-analog

Please cite as : Rodríguez-Ramos, Josué, Natalie Sadler, Elias K. Zegeye, Yuliya Farris, Samuel Purvine, Sneha Couvillion, William C. Nelson, and Kirsten Hofmockel. Environmental matrix and moisture are key determinants of microbial phenotypes expressed in a reduced complexity soil-analog. 2024....

Biology
Microbiome Science
Earth System Science
Dataset
Chitin Decomposition 16S rRNA gene fastq

Please cite as : Nicholas J Reichart, Sheryl Bell, Vanessa A. Garayburu-Caruso, Natalie Sadler, Sharon Zhao, Kirsten Hofmockel. Chitin Decomposition 16S rRNA gene fastq. 2024 . [Data Set] PNNL DataHub. 10.25584/2475041. This data is published under a CC0 license . The authors encourage data reuse...

Biology
Earth System Science
Dataset
Global Soil Virus (GSV) Atlas

Please cite as : Graham E.B., A. Camargo, R. Wu, R.Y. Neches, M. Nolan, W.C. Nelson, and M.M. Pleake, et al. 2024. Global Soil Virus (GSV) Atlas. [Data Set] PNNL DataHub. 10.25584/2229733 This data is published under a CC0 license . The authors encourage data reuse and request attribution by...

Biology
Earth System Science
Dataset
RNA viruses in grassland soils (Prosser, WA)

Please cite as : Wu R., A.E. Zimmerman, and K.S. Hofmockel. 2023. RNA viruses in grassland soils (Prosser, WA). [Data Set] PNNL DataHub. https://data.pnnl.gov/group/nodes/dataset/33706 The data is comprised of RNA viral sequences that were bioinformatically screened from the de novo assemblies of...

Biology
Earth System Science
Dataset
An Inventory of AI-ready Benchmark Data for US Fires, Heatwaves, and Droughts

Extreme weather events, including fires, heatwaves(HWs), and droughts, have significant impacts on earth, environmental, and power energy systems. Mechanistic and predictive understanding, as well as probabilistic risk assessment of these extreme weather events, are crucial for detecting, planning...

Data Analytics & Machine Learning
Earth System Science
Dataset
Global 1km Land Surface Parameters for Kilometer Scale Earth System Modeling

This dataset presents land surface parameters designed explicitly for global kilometer-scale Earth system modeling and has significant implications for enhancing our understanding of water, carbon, and energy cycles in the context of global change. Specifically, it includes four categories of...

Earth System Science
Atmospheric Science
Coastal Science
Ecosystem Science
Plant Science
Subsurface Science
Terrestrial Aquatics
Dataset
Omics-Lethal Human Viruses, MERS-CoV Experiment MCL005

Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson MERS-CoV Experiment MCL005 Metadata The purpose of this experiment was to evaluate the human host epigenetic response to MERS-CoV virus infection. Samples were obtained from human lung adenocarcinoma cells (Calu-3) and processed for...

Biology
Human Health
Integrative Omics
Dataset
Omics-Lethal Human Viruses, MERS-CoV Experiment MCL004

Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson MERS-CoV Experiment MCL004 Metadata The purpose of this experiment was to evaluate the host response to MERS-CoV virus infection. Sample data was obtained from human lung adenocarcinoma cells (Calu-3) and processed for genome binding/occupancy...

Biology
Human Health
Integrative Omics
Dataset
Omics-Lethal Human Viruses, West Nile Experiment WGCN004

Omics-LHV, West Nile Experiment WGCN004 The purpose of this West Nile experiment was to obtain samples for omics analysis in primary mouse granule neuron cells infected with wild type West Nile virus (WNV-NY99 clone 382, WNVWT) and mutant virus (WNVE218A). Overall Design: Granule cell neurons from...

Biology
Human Health
Integrative Omics
Dataset
Model Soil Consortium 2 (MSC-2) Bacterial Isolate Genomes

Please cite as : McClure R.S., Y. Farris, R.E. Danczak, W.C. Nelson, H. Song, A. Kessler, and J. Lee, et al. 2022. Model Soil Consortium 2 (MSC-2) Bacterial Isolate Genomes. [Data Set] PNNL DataHub. https://doi.org/10.25584/PNNLDH/1986536 Model Soil Consortium 2 (MSC-2) Bacterial Isolate Genomes...

Biology
Earth System Science
Dataset
Metatranscriptomic data from MSC-2

Please cite as : McClure R.S., Y. Farris, R.E. Danczak, W.C. Nelson, H. Song, A. Kessler, and J. Lee, et al. 2022. Metatranscriptomic data from MSC-2. [Data Set] PNNL DataHub. https://data.pnnl.gov/group/nodes/dataset/33232 Metatranscriptomic data from MSC-2 12 fastq files (6 forward read, 6 reverse...

Ecosystem Science
Dataset
WA-Omics_LA.1.0 (Metabolomics, Lipidomics, & Amplicon 16S/ITS, WA)

Rapid remodeling of the soil lipidome in response to a drying-rewetting event - Multi-Omics Data Package DOI Data package contents reported here are the first version and contain pre- and post-processed data acquisition and subsequent downstream analysis files using various data source instrument...

Biology
Earth System Science
Dataset
IA-TmG.2.0 (Metagenome, IA)

Please cite as : Anderson L.N., R. Wu, W.C. Nelson, J.E. McDermott, K.S. Hofmockel, and J.K. Jansson. 2021. IA-TmG.2.0 (Metagenome, IA). [Data Set] PNNL DataHub. https://doi.org/10.25584/IATmG2/1770333 Soil samples were collected in triplicate in the fall of 2017 across the three grassland locations...

Biology
Earth System Science
Dataset
KS-TmG.2.0 (Metagenome, KS)

Please cite as : Anderson L.N., R. Wu, W.C. Nelson, J.E. McDermott, K.S. Hofmockel, and J.K. Jansson. 2021. KS-TmG.2.0 (Metagenome, KS). [Data Set] PNNL DataHub. https://doi.org/10.25584/KSTmG2/1770332 Soil samples were collected in triplicate in the fall of 2017 across the three grassland locations...

Biology
Earth System Science
Dataset
WA-TmG.2.0 (Metagenome, WA)

Please cite as : Anderson L.N., R. Wu, W.C. Nelson, J.E. McDermott, K.S. Hofmockel, and J.K. Jansson. 2021. WA-TmG.2.0 (Metagenome, WA). [Data Set] PNNL DataHub. https://doi.org/10.25584/WATmG2/1770324​​​​​​​ Soil samples were collected in triplicate in the fall of 2017 across the three grassland...

Biology
Earth System Science