Predicting phenotypic expression from genomic and environmental information is arguably the greatest challenge in today’s biology. Being able to survey genomic content, e.g., as single-nucleotide polymorphism data, within a diverse population and predict the phenotypes of external traits, represents...
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Soil microorganisms play fundamental roles in cycling of soil carbon, nitrogen, and other nutrients, yet we have a poor understanding of how soil microbiomes are shaped by their nutritional and physical environment. In this study, we investigated the successional dynamics of a soil microbiome during...
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The direct and diffused components of downward shortwave radiation (SW), and photosynthetically active radiation (PAR) at the Earth surface play an essential role in biochemical (e.g. photosynthesis) and physical (e.g. energy balance) processes that control weather and climate conditions, and...
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Soil respiration (Rs), the flow of CO2 from the soil surface to the atmosphere, is one of the largest carbon fluxes in the terrestrial biosphere. The spatial variability of Rs is both large and poorly understood, limiting our ability to robustly scale it in space. One factor in Rs spatial...
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The high temporal variability of the soil-to-atmosphere CO2 flux (soil respiration, RS) has been studied at hourly to multiannual timescales, but remains less well understood than RS spatial variability. How RS fluxes vary and are auto-correlated at various time lags has practical implications for...
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Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson Omics-LHV Profiling of Host Response to West Nile Virus Infection Background West Nile virus ( WNV ) belongs to the mosquito-borne Flaviviridae family and is classified as a Category A priority pathogen by the National Institute of Allergy and...
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Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson Omics-LHV Profiling of Host Response to Ebola Virus Infection Background Ebola virus ( EBOV ) is a high risk biological agent, belonging to the Flaviviridae family, and is classified as a Category A priority pathogen by the National Institute...
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Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson Omics-LHV Profiling of Host Response to MERS-CoV Virus Infection Background Middle East Respiratory Syndrome coronavirus ( MERS-CoV ), part of the Coronaviridae family, is classified as a Category C priority pathogen by the National Institute...
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Last updated on 2024-02-11T22:41:43+00:00 by LN Anderson Omics-LHV Profiling of Host Interferon-Stimulated Response to Virus Infection Background The human host Interferon ( IFN ) alpha, beta, and gamma participate in the body's natural immune response to lethal virus infection and disease. The...
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Some of the most rapid environmental changes on the planet are experienced in high-latitude regions. These changes affect all Earth system components, including the ocean, atmosphere, cryosphere, and marine and terrestrial ecosystems, and have both regional and global implications. The main...
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The long-term goals of this scientific focus area (SFA) are to develop flexible and extensible modeling capabilities that capture the dynamic multiscale interactions among climate, energy, water, land, socioeconomics, critical infrastructure, and other sectors and to use these capabilities to study...
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Accurate characterization of the global downward shortwave (SW) and photosynthetically active radiation (PAR) is fundamental for Earth system modeling and global change research. Combined with a machine-learning method, we used the Earth Polychromatic Imaging Camera (EPIC) data onboard the Deep...
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The objective of Terrestrial-Aquatic Interface (TAI) research in PREMIS is to understand the factors governing C and nutrient movement and transformation through the TAI, and their sensitivities to inundation and salinity within coastal watersheds.
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The Predicting Ecosystem Resilience through Multiscale Integrative Science (PREMIS) database was generated to mechanistically understand how feedbacks across scales, from molecular to plant to plant populations and communities to ecosystems, govern the resilience of system functions to elevated CO2...
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The Illumina MiSeq System Sequencer is a high-throughput DNA sequencer machine developed and manufactured by Illumina , and is designed for sequencing data acquisition using synthesis technology to provide an end-to-end solution (cluster generation, amplification, sequencing, and data analysis) in a...
