The Phenotypic Response of the Soil Microbiome to Environmental Perturbations Project (Soil Microbiome SFA) at Pacific Northwest National Laboratory is a Genomic Sciences Program Science Focus Area (SFA) Project operating under the Environmental Microbiome Science Research Area. The Soil Microbiome...

The following R source code was used for plotting figures of the viral communities detected from three grasslands soil metagenomes with a historical precipitation gradient (WA-TmG.2.0, KS-TmG.2.0, IA-TmG.2.0) from project publication 'DNA viral diversity, abundance and functional potential vary...

Fusarium sp. DS682 Proteogenomics Statistical Data Analysis of SFA dataset download: 10.25584/KSOmicsFspDS682/1766303. GitHub Repository Source: https://github.com/lmbramer/Fusarium-sp.-DS-682-Proteogenomics MaxQuant Export Files (txt) Trelliscope Boxplots (jsonp) Fusarium Report (.Rmd, html)...

ProxyTSPRD profiles are collected using NVIDIA Nsight Systems version 2020.3.2.6-87e152c and capture computational patterns from training deep learning-based time-series proxy-applications on four different levels: models (Long short-term Memory and Convolutional Neural Network), DL frameworks...

Model Soil Consortium 2 (MSC-2) Bacterial Isolate Genomes Model Soil Consortium 2 (MSC-2) bacterial isolate genome collections are derived from the soil consortium "MSC-1" multi-species cultured isolate genome collections from a previously reported WA-IsoC_MSC1.1.0 collection of a naturally evolved...

16s data from MSC-2 growth 3 fastq of 16s amplicon data of MSC2 1 csv file of raw ASV abundances for MSC2

Metatranscriptomic data from MSC-2 12 fastq files (6 forward read, 6 reverse read) describing transcriptomic response of MSC-2 during chitin growth. 1 csv file showing normalized gene expression values

Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson Ebola Virus Experiment EU937001 The purpose of this experiment was to evaluate the human host response to Zaire Ebola wild-type virus and mutant virus infection. Samples were obtained from human histiocytic lymphoma cells (U937), expressing...

Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson Influenza A Virus Experiment ICL102 The purpose of this experiment was to evaluate the human host cellular response to wild-type Influenza A/Anhui/1/2013 (H7N9; "AH1-WT") virus and mutant viruses NS1-L103F/I106M ("AH1-F/M") and partially...

Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson Influenza A Virus Experiment ICL103 The purpose of this experiment was to evaluate the human host response to Influenza A wild-type (H5N1) virus and mutant viruses. Sample data was obtained for human lung adenocarcinoma cell line (Calu-3)...

Last updated on 2023-01-30T00:09:57+00:00 by LN Anderson West Nile Virus Experiment WLN003 The purpose of this experiment was to evaluate the host response to wild-type West Nile virus infectious clone (WNV-NY99 clone 382) and mutant WNV-E218A (WNV-NY99 382 E218A 2 nt) virus infection. Sample data...

The OSU/PNNL Superfund Research Program (SRP) represents a longstanding collaboration to quantify Polycyclic Aromatic Hydrocarbons (PAHs) at various superfund sites in the Pacific Northwest and assess their potential impact on human health. To link the chemical measurements to biological activity...

Both the hourly and daily data are provided in the product. The hourly data are grouped by day in distinct NetCDF files, which are named as “EPIC_SW_PAR_Hourly_yyyymmdd.nc” where “yyyy”, “mm”, and “dd” denote year, month, and day (UTC time). The daily data are grouped by month in distinct NetCDF...

Both the hourly and daily data are provided in the product. The hourly data are grouped by day in distinct NetCDF files, which are named as “EPIC_SW_PAR_Hourly_yyyymmdd.nc” where “yyyy”, “mm”, and “dd” denote year, month, and day (UTC time). The daily data are grouped by month in distinct NetCDF...

Both the hourly and daily data are provided in the product. The hourly data are grouped by day in distinct NetCDF files, which are named as “EPIC_SW_PAR_Hourly_yyyymmdd.nc” where “yyyy”, “mm”, and “dd” denote year, month, and day (UTC time). The daily data are grouped by month in distinct NetCDF...