PNNL Soil Microbiome SFA

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Principal Investigator

Description

The Phenotypic Response of the Soil Microbiome to Environmental Perturbations Project (Soil Microbiome SFA) at Pacific Northwest National Laboratory is a Genomic Sciences Program Science Focus Area (SFA) Project operating under the Environmental Microbiome Science Research Area. The Soil Microbiome SFA aims to develop a systems-level understanding of soil microbial and phenotypic responses to changing moisture through a tractable, spatially explicit examination of the molecular and ecological interactions occurring within and between microbial consortia in soil. The Soil Microbiome SFA project repository at PNNL DataHub allows for exploring and downloading integrated experimental omics data, experimental metadata, pre- and post-processed data files, and other associated materials directly related to experimental project publication data.

For updates and more information, visit the PNNL Soil Microbiome SFA homepage.

Related Resources

        Federal Acknowledgements

        This research was supported by the Department of Energy Office of Biological and Environmental Research (BER) and is a contribution of the Scientific Focus Area ‘Phenotypic response of the soil microbiome to environmental perturbations’. PNNL is operated for the DOE by Battelle Memorial Institute under Contract DE-AC05-76RLO1830. A portion of this work was performed under the EMSL user project award 10.46936/cpcy.proj.2021.60161/60000437, utilizing instrument capabilities operating at the Environmental Molecular Sciences Laboratory, a DOE Office of Science User Facility sponsored by the Biological and Environmental Research program under Contract No. DE-AC05-76RL01830.

        Contributions

        • LN Anderson - Data Biocuration (writing, review & editing)
        • M Pleake - IT Engineering Support (resources)

           

          Last updated on 2022-10-05T19:12:03+00:00

          Project status

          Active
          English
          Datasets (13)
          Publications (9)
          Elias Zegeye
          Colin Brislawn
          Yuliya Farris
          Sarah J. Fansler
          Kirsten Hofmockel
          Janet K. Jansson
          Aaron Wright
          Emily Graham
          Dan Naylor
          Ryan McClure
          Hans Bernstein
          Dr William C Nelson
          Lindsey N. Anderson
          Janet K. Jansson
          Ruonan Wu
          Jason McDermott
          Sheryl L. Bell
          Ari Jumpponen
          Sarah J. Fansler
          Kimberly J. Tyrrell
          Yuliya Farris
          Kirsten Hofmockel
          Arunima Bhattacharjee
          Lindsey N. Anderson
          Andrea Porras-Alfaro
          Ari Jumpponen
          Kirsten Hofmockel
          Janet K. Jansson
          Dr Christopher R Anderton
          Dr William C Nelson
          Ryan McClure
          Dan Naylor
          Yuliya Farris
          Michelle R Davison
          Sarah J. Fansler
          Kirsten Hofmockel
          Janet K. Jansson
          Arunima Bhattacharjee
          Lindsey N. Anderson
          Dr William C Nelson
          Ari Jumpponen
          Janet K. Jansson
          Kirsten Hofmockel
          Dr Christopher R Anderton
          Dan Naylor
          Sarah J. Fansler
          Dr William C Nelson
          Kirsten Hofmockel
          Janet K. Jansson
          Ryan McClure
          Ruonan Wu
          Michelle R Davison
          Dr William C Nelson
          Emily Graham
          Sarah J. Fansler
          Yuliya Farris
          Jason McDermott
          Kirsten Hofmockel
          Janet K. Jansson
          Sheryl L. Bell
          People (11)

          Dr. Jason McDermott, senior research scientist, has extensive research experience in molecular and structural virology and data resource design, data integration and prediction of biological networks, bridging experimental and computational biology. Currently, his research interests include data...

          Lindsey Anderson’s research has been dedicated to the identification and characterization of novel, targeted and non-targeted, functional metabolic interactions using a high-throughput systems biology and computational biology approach. Her expertise in functional metabolism and multidisciplinary...

          Hyun Song’s research is directed toward developing modeling and computational tools for the simulation of cellular metabolism and microbial community dynamics. His research interest in metabolic modeling includes 1) omics data-guided estimation of flux distribution in a genome-scale metabolic...

          Tom Metz is a Principal Investigator within the Integrative Omics group at PNNL and the Metabolomics Team Lead for a group of scientists that focuses on development and applications of high throughput metabolomics and lipidomics methods to various biological questions. He has worked to develop state...

          Janet Jansson is Chief Scientist for Biology in the Biological Sciences Division and a Laboratory Fellow at the Pacific Northwest National Laboratory (PNNL). Jansson has more than 30 years of experience in microbial ecology. Jansson earned an M.S.in Soil Microbiology at Colorado State University...

          As Integrative Research Scientist, Dr. Hofmockel develops the overall science and technology strategy for EMSL in collaboration with the Deputy Directors. Responsible for EMSL’s Strategic Science Area in collaboration with the Deputy Directors. Is the interface with BER and the user community for...

          Michelle Davison is a microbiologist with a love of challenging, creative, and multidisciplinary projects. She is interested in the role phage play in environmental systems, as well as the myriad ways they can be harnessed as tools. She has experience isolating, developing and working with non-model...

          Publications: 2018 Khan NE, Y Maezato, RS McClure, CJ Brislawn, JM Mobberley, NG Isern, WB Chrisler, LM Markillie, BM Barney, HS Song, WC Nelson, and HC Bernstein. 2018. "Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture." Scientific...

          Chris received his Bachelor of Science degree in chemistry at the University of Colorado at Colorado Springs in 2005. He attained his PhD in chemistry at the University of Illinois at Urbana–Champaign in 2011, under Mary L. Kraft, where his graduate work focused on using secondary ion mass...

          Biography Dr. Mary Lipton is currently a Staff Scientist at the Pacific Northwest National Laboratory and Adjunct Professor at Washington State University-Tri-Cities in Richland and Adjunct Professor in the Institute for Biological Chemistry and Washington State University Pullman. She is nationally...

          Sneha Couvillion’s current research focuses on deciphering microbial metabolic activity and interactions using a combination of powerful mass-spectrometry (MS)-based omics methods (metabolomics, lipidomics, and proteomics) in a variety of environmental and human health related projects. Expertise...

          Data Sources (12)
          Methods (1)
          Resources (2)